XLOC_004473 (si:dkey-32n7.4)


Basic Information

Item Value
gene id XLOC_004473
gene name si:dkey-32n7.4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 4114401 ~ 4145033 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008951
attcatggcactgaagttccccaaccgaaggggaaccccACTGTGTTGGAGTTATCAAAATGCGCACACACGTGTGACGCACTAGAGGGAAGGGCGATTTGTCCGGCGAGGCGGCGACTTGGATTTCCTGACATATCCTGACATTTcatcatttcattaaaaaattacgACGTCACCCTAAGCTAGGCTAAAAAGTGCTCCTGCAAGACCTGGGGATCGATGGAAGGGATTCAAAAGTGTCGATGCTTGCACCACTTTTCACAACTAAGACTCACTTCTGACACATCTGACTTGTCTGCCTCCCCTCATGCACCCTTCAGTTCTACATCTGACAGATCATGATGGATTGGTACTCCTACATCAGTTTATGCATCTTCTGTGTGCCTCAGTCAGTGATGACTTTTAACGTGGATCATGCTGCCTGGAAAACTTTCACTGCACCACTGACCAATAATGTTGCCTTTGGCTACAAGGTGATACAAGAAGACATGACAAGACTGACTGTGAGTGATCCTTTAATTCAAATCAATCGTGATGAAAGAGGACAGATTTATAGTTGTGATGTCAATCGAGGAACCTGCTCATCATTGAATATTTATGGTAGAGTTCCCTCTGAAGCAGTCAACATGTCTTTAGGACTTTCCATGGTTAAAGATCCAGGCTCTTCAAAGCTGGTGGTTTGTGGTCCAACCATTCCAAAGAACTGTCCAGGAGTGTCCACCTACAATGGCATGTGCTTTGTTAATGAACACAGAAGAAGTTTTACAGGTCCAATACCCAGCTCTCTGAGAGAATGCCCCAAATCACAAATTGATATTGCTTTTTTATTGGATGGATCTGGAAGTGTAGATCCTGTGGATTTTAATAAGATGAAGGCTTTTGTTGTAGAAATGATCAAGAGTTTTATAGACCGTGACACACAGTTTGCAATAGCACAGTTTTCTACAGAATGTGTCATTCATTACAAGTTTCAACAAGTCAAAAACCCTGCCTGGTGGCAAAGAGCAGTGAATGGGATACAACAAACACATGGATGGACTTTCACTGCAACAGCTATAAGACTGCTTGTGGAGTCATTATTTGTAAGTAGTGGAGGTGCAAGACAATCAGCCAGTAAAATTCTGGTCGTCATCACGGATGGAGAATCAAACGATAAATTTTTGACTGAAGCTGTTCAacaagcacaagaaaaaagtaTAACACGATATGCAATTGGGGTCGGTAATGCTTTCAATAAATACAGTGCAAGAAATGAGCTAACGGTTATTGCATCCATACCCACCGATAAGCATGTGTTCAAAGTTACCGATTTTGATGCTCTGGAAAGCATTCGGGAAATACTTAAAGAGAACATTATTGCCATCGAAGGAACCCAGACGTCTGGAGATTCATCTCGAATGGAGTTTGCACAGGATGGGTTTAGTGCAGCACTGACATCAGATACGGATTTGATCATGACTGCAGTTGGAGCTTTTCAGTGGAAAGGTGGATATCAGCTCTTCAAATTAAACGACCAGACAAGTGTCTTTCAAGCTGGAAGTGAGCATAACAGTTATTTAGGTTACTCCCTGGCAATAGCGACAGTGTATAATACGAAGTATGCAGTCATGGGGGCGCCAAGACACAAGCATGAAGGACTAGTTACAGTTACACGAATTGATCGAATGAGCGATCAAATCCAACTGGATCCTCCCAAGACTCAGATTGGCTCTTATTTTGGAGCTGAGGTGTGTGTGGTGGATTTGAACAGTGACTCTAATACAGATCTGCTTCTGGTATCAGCACCGACATACACAGAGTCTGAGCGAGAGGGGAAAGTGTTTGTTTATAGCTACACACGTCGGCCATTCTTCAGTTTTTCTGATGTGGTGCTGGTGGGCATGGCCGGTCAGAGGGGTCGATTCGGCTCTTCTCTGGCCAGTCCAGCAGATCTGAATGGTGATGGTTTTAAGGATGTGCTGGTTGGTGCACCGTTAGAGGAGGATGGAAAGGGTAGCATCTACATCTTCAATGGACGAGATGGAGGGATCATTTCATCATACTCCCAGAGGATTGCTGGATCATCTGTGCAGTCAGGATTGCAGTACTTTGGTGTTTCCTTGAGTCAATCCTCTCCAGACCAGACTGCAGACAGCCTTCCTGACATTGCTGTTGGGTCCAAAGGAGCAGTTCTGCTTCTCAGGTCCAGACCCATCATGCTCTTGGAAACAAAAGTGTCTTACAACCCATCCAAAATATCAACTGGTCACACAGATTGCAAAAACCAATTGCAGACCACTCTGATCGTGTGCTTCACCATGAAAGGATACAGGCATCACAAAAGAGATTTGAATGCAAAAATTACTTACAACATAACTCTGGATGCTAAGAGACAGAATCATCGAGCATTCTTCTCAGCCAAAGACAATCTCCTCAGTAATGTGATTGACATTGGGAATACAGAAGTTTGCAAAAATCATGATTTCTTAATAGAGGCTTGTCCAGAAGATGCTCTGAATCCATTGTCCAATCAGTTAAAATTCACCTTTGAGGGTCTGCCATCTAGTCAAATGCAAAACCTGAGGCCAATACTGCTGCCAGAGATAAAGACCACCTCAGATCACGATCTGGATTTTGAGAGAGAATGTGGAAAAGATAATGTATGTGTTGATAATCTCAGAGTGGATTTCAATTTCTCTGGATCTACTAATATAGAAGTGGGGATAATGCAGGAGATCAACGTGACGGTGTTTGTCGAGAACAGAGGAGAAAACTCATACAACACACACTTCACCCTCAATTACCCATATGGATTTTCATACAGGAGAATCACATCAAAACAGGGCAGAGTAGAGTGTTCGTCTCTGGATGGAGAGCAAGGGGTTCGACTGGGAGAAACTGAATGCGCCATCAGTAAACCCATCCTCAAGGATAATACTAAGATTGTGTTTGAGATTACGTACAGCATTAATAAAGAAGTTACACTGGGACAAAACGTGATATTCAGTGCTTCAGTCAAGAGTGGGAATGACAAACACTCTGAAAGCAGCGAGTTATCGAAAAAGAAAAGCATTGATGTGAAATATGGCATCTATGTCGCCCTGATCCGGCATGAAAATTCCACCATCCACATCAACTTTACTTCAGGGAAGAAGGATCTTTCAAAACCCGTCCAGCAGACAATAAAGATTGAAAATGACCTCAGACCGTTAGCTTTCACAGCTTTCATCAGAGTACCATTGAAGCTTGGTGATACCGACATCTGGAAAGAATCTACTTTGCAAGTTTCTGACTGTGTGAAAAATAAAACGGAGAAGCCTAGTGTTACAAATTATATGGATGATATTAAAAAACATCATGTACTGaACTGCAGTGTGGCGGTGTGTGCCGTGTTTATCTGTGATGTCAATCTCATAAAGAATGAAAGGAAGCTCTATAATATTACTGGCAATGTGAGCTCTGCGTGGATTGAGCAGACTGGACTCAAAAGCGCTGTGTTTGAGCTGGTCAGTACAACCACTATGGATTACGACATGAGCACATATGTTTTCTTTTCCTCGGATTCCAGAAACACGGCGCCGTCTTTACAGATCAGCACTCAGGTGGAGGTTTATGAGGAGGTGGACCTGACAAAGGAGATCATTGGAGGAGTGATTGGAGGACTTGTGCTGCTGGCTCTCATCACTGCGGCCCTCTATAAGGCTGGGTTCTTCAAAAGCCAGTACAAGCAGATGATGGAGGAGGCACAGGGAGAAGAAGCGCCACAATAATGTGCACTCAAACAGTTATGGGATACTGATTGAGTTCTGTGGGATTTACAGTCACACATATTTAACCCTATAACtgagggatgtcaaactcaattcctggagggccgcagtcctgcatagtttagttccaaccctgctccaacacacttacctgtaggtttcaaacaagcctgaaggactcaattggtttgatcaggtgtgtttaattagggttggaactaaactgtgcaggactgcggccctccaggaattgagtttgacttCTCTGCTTTAACTGGTGCCCCACTTTttaaacagatataaaaattACATGTTCAGTTTAAATTAATGCCAATCTTAGATGCTGTGGTGCATAGATTTAAATTTGGTCTAATTTTAAAGACAGATGTCAGATTTTAGCTGAAGGGAAAAATGCTCAAATAAAAGTTGTGccattttgtttataaaaaaaacttttattttttagtattttacaTACTAAAACATGGTTTTACCAAAATCAAGCTAAATATCTGATCAAATTACTGTATATTCCAATTTTGAAATgtctcaaaaaaaataataagcctGTGAGTATTATTTTGTTGGACCGCAATACCAAACATGACCACTAAATAACATCCAGTTTATATTGGTGACAATACAAGGGCGCCCCCTATGTTTTAAGGAACAAAACCATGTTTTATTCATACATTTGACTGTATTTGTAAAGTAAACCTAAATTCTAAAGTACTATGGGCAGTTTGATGGTATTTGGTTGGAATTTAGACTCTAtagtggattgctgtagcaaagtaatgctttacgacTCTGAATAGTATCCTTGTAGGAAATTAATAAAGAACTTTTGCTCAGTAATATCTAACTAAAACTGTCACCAGATATGAAAACTAGAAAGTTTACACTTTTAAACGCTTATTAGTTTGTTGTCATGTTTGCTTTGTTTAGGCTACAATATTATGGTTTAAAACCGTAAATGGTCCCACAGGTTGTAGGGTGACAGTAATCTGTGTTTAAATCTATTATTCATACATAACACAAACAAGTAACAGACCTTTCCAATGATATATATTTAGTCATTATTAGATAGGGACTTTAATGAAAAAATGTCGTAAACATAATTGTCCTGGTAGCAGAACAGTGACAGTGATGAACAACtaatatactaaaatattttacttgaaatgTTATTAGAAATGTTGTATTGGATAGGCACACGGTTATTgagatgttttcttttaaattatctaaacattttttttatcattgtctctgggtgttttgaaaatgtttaatgctgtatatacagtatacagttgaagtcagggtTTTTAGcgcccctttgattttattttcttttttaaatatttcc
>TCONS_00008952
ATGATGGATTGGTACTCCTACATCAGTTTATGCATCTTCTGTGTGCCTCAGTCAGTGATGACTTTTAACGTGGATCATGCTGCCTGGAAAACTTTCACTGCACCACTGACCAATAATGTTGCCTTTGGCTACAAGGTGATACAAGAAGACATGACAAGACTGACTGTGAGTGATCCTTTAATTCAAATCAATCGTGATGAAAGAGGACAGATTTATAGTTGTGATGTCAATCGAGGAACCTGCTCATCATTGAATATTTATGGTAGAGTTCCCTCTGAAGCAGTCAACATGTCTTTAGGACTTTCCATGGTTAAAGATCCAGGCTCTTCAAAGCTGGTGGTTTGTGGTCCAACCATTCCAAAGAACTGTCCAGGAGTGTCCACCTACAATGGCATGTGCTTTGTTAATGAACACAGAAGAAGTTTTACAGGTCCAATACCCAGCTCTCTGAGAGAATGCCCCAAATCACAAATTGATATTGCTTTTTTATTGGATGGATCTGGAAGTGTAGATCCTGTGGATTTTAATAAGATGAAGGCTTTTGTTGTAGAAATGATCAAGAGTTTTATAGACCGTGACACACAGTTTGCAATAGCACAGTTTTCTACAGAATGTGTCATTCATTACAAGTTTCAACAAGTCAAAAACCCTGCCTGGTGGCAAAGAGCAGTGAATGGGATACAACAAACACATGGATGGACTTTCACTGCAACAGCTATAAGACTGCTTGTGGAGTCATTATTTGTAAGTAGTGGAGGTGCAAGACAATCAGCCAGTAAAATTCTGGTCGTCATCACGGATGGAGAATCAAACGATAAATTTTTGACTGAAGCTGTTCAacaagcacaagaaaaaagtaTAACACGATATGCAATTGGGGTCGGTAATGCTTTCAATAAATACAGTGCAAGAAATGAGCTAACGGTTATTGCATCCATACCCACCGATAAGCATGTGTTCAAAGTTACCGATTTTGATGCTCTGGAAAGCATTCGGGAAATACTTAAAGAGAACATTATTGCCATCGAAGGAACCCAGACGTCTGGAGATTCATCTCGAATGGAGTTTGCACAGGATGGGTTTAGTGCAGCACTGACATCAGATACGGATTTGATCATGACTGCAGTTGGAGCTTTTCAGTGGAAAGGTGGATATCAGCTCTTCAAATTAAACGACCAGACAAGTGTCTTTCAAGCTGGAAGTGAGCATAACAGTTATTTAGGTTACTCCCTGGCAATAGCGACAGTGTATAATACGAAGTATGCAGTCATGGGGGCGCCAAGACACAAGCATGAAGGACTAGTTACAGTTACACGAATTGATCGAATGAGCGATCAAATCCAACTGGATCCTCCCAAGACTCAGATTGGCTCTTATTTTGGAGCTGAGGTGTGTGTGGTGGATTTGAACAGTGACTCTAATACAGATCTGCTTCTGGTATCAGCACCGACATACACAGAGTCTGAGCGAGAGGGGAAAGTGTTTGTTTATAGCTACACACGTCGGCCATTCTTCAGTTTTTCTGATGTGGTGCTGGTGGGCATGGCCGGTCAGAGGGGTCGATTCGGCTCTTCTCTGGCCAGTCCAGCAGATCTGAATGGTGATGGTTTTAAGGATGTGCTGGTTGGTGCACCGTTAGAGGAGGATGGAAAGGGTAGCATCTACATCTTCAATGGACGAGATGGAGGGATCATTTCATCATACTCCCAGAGGATTGCTGGATCATCTGTGCAGTCAGGATTGCAGTACTTTGGTGTTTCCTTGAGTCAATCCTCTCCAGACCAGACTGCAGACAGCCTTCCTGACATTGCTGTTGGGTCCAAAGGAGCAGTTCTGCTTCTCAGGTCCAGACCCATCATGCTCTTGGAAACAAAAGTGTCTTACAACCCATCCAAAATATCAACTGGTCACACAGATTGCAAAAACCAATTGCAGACCACTCTGATCGTGTGCTTCACCATGAAAGGATACAGGCATCACAAAAGAGATTTGAATGCAAAAATTACTTACAACATAACTCTGGATGCTAAGAGACAGAATCATCGAGCATTCTTCTCAGCCAAAGACAATCTCCTCAGTAATGTGATTGACATTGGGAATACAGAAGTTTGCAAAAATCATGATTTCTTAATAGAGGCTTGTCCAGAAGATGCTCTGAATCCATTGTCCAATCAGTTAAAATTCACCTTTGAGGGTCTGCCATCTAGTCAAATGCAAAACCTGAGGCCAATACTGCTGCCAGAGATAAAGACCACCTCAGATCACGATCTGGATTTTGAGAGAGAATGTGGAAAAGATAATGTATGTGTTGATAATCTCAGAGTGGATTTCAATTTCTCTGGATCTACTAATATAGAAGTGGGGATAATGCAGGAGATCAACGTGACGGTGTTTGTCGAGAACAGAGGAGAAAACTCATACAACACACACTTCACCCTCAATTACCCATATGGATTTTCATACAGGAGAATCACATCAAAACAGGGCAGAGTAGAGTGTTCGTCTCTGGATGGAGAGCAAGGGGTTCGACTGGGAGAAACTGAATGCGCCATCAGTAAACCCATCCTCAAGGATAATACTAAGATTGTGTTTGAGATTACGTACAGCATTAATAAAGAAGTTACACTGGGACAAAACGTGATATTCAGTGCTTCAGTCAAGAGTGGGAATGACAAACACTCTGAAAGCAGCGAGTTATCGAAAAAGAAAAGCATTGATGTGAAATATGGCATCTATGTCGCCCTGATCCGGCATGAAAATTCCACCATCCACATCAACTTTACTTCAGGGAAGAAGGATCTTTCAAAACCCGTCCAGCAGACAATAAAGATTGAAAATGACCTCAGACCGTTAGCTTTCACAGCTTTCATCAGAGTACCATTGAAGCTTGGTGATACCGACATCTGGAAAGAATCTACTTTGCAAGTTTCTGACTGTGTGAAAAATAAAACGGAGAAGCCTAGTGTTACAAATTATATGGATGATATTAAAAAACATCATGTACTGaACTGCAGTGTGGCGGTGTGTGCCGTGTTTATCTGTGATGTCAATCTCATAAAGAATGAAAGGAAGCTCTATAATATTACTGGCAATGTGAGCTCTGCGTGGATTGAGCAGACTGGACTCAAAAGCGCTGTGTTTGAGCTGGTCAGTACAACCACTATGGATTACGACATGAGCACATATGTTTTCTTTTCCTCGGATTCCAGAAACACGGCGCCGTCTTTACAGATCAGCACTCAGGTGGAGGTTTATGAGGAGGTGGACCTGACAAAGGAGATCATTGGAGGAGTGATTGGAGGACTTGTGCTGCTGGCTCTCATCACTGCGGCCCTCTATAAGGCTGGGTTCTTCAAAAGCCAGTACAAGCAGATGATGGAGGAGGCACAGGGAGAAGAAGCGCCACAATAA

Function

GO:

id name namespace
GO:0007229 integrin-mediated signaling pathway biological_process
GO:0007155 cell adhesion biological_process
GO:0008305 integrin complex cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-110411-175 Predicted to enable metal ion binding activity. Predicted to act upstream of or within cell adhesion and integrin-mediated signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of integrin complex. Human ortholog(s) of this gene implicated in lupus nephritis. Orthologous to several human genes including ITGAX (integrin subunit alpha X).

Ensembl:

ensembl_id ENSDARG00000002956

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008951 False 5121 mRNA 0.40 31 4114401 4145033
TCONS_00008952 True 3411 mRNA 0.43 30 4116516 4143661

Neighbor

gene id symbol gene type direction distance location
XLOC_004472 NA coding upstream 7991 4103788 ~ 4106410 (+)
XLOC_004471 NA coding upstream 20828 4092452 ~ 4093573 (+)
XLOC_004470 zgc:123217 coding upstream 70269 4036409 ~ 4044132 (+)
XLOC_004469 NA coding upstream 122978 3986079 ~ 3991423 (+)
XLOC_004468 tbx6 coding upstream 191331 3912544 ~ 3923070 (+)
XLOC_004474 itgam coding downstream 2681 4147714 ~ 4157240 (+)
XLOC_004475 itgam coding downstream 15771 4160804 ~ 4167750 (+)
XLOC_004476 mapk7 coding downstream 75320 4220353 ~ 4238827 (+)
XLOC_004477 mmp25b coding downstream 115746 4260779 ~ 4278329 (+)
XLOC_004478 NA coding downstream 263626 4408659 ~ 4450452 (+)
XLOC_004456 NA non-coding upstream 1342011 2769565 ~ 2772390 (+)
XLOC_004450 NA non-coding upstream 1507369 2578020 ~ 2607032 (+)
XLOC_004479 NA non-coding downstream 283090 4428123 ~ 4473148 (+)
XLOC_004480 CABZ01030103.1 non-coding downstream 352331 4497364 ~ 4497479 (+)
XLOC_004483 NA non-coding downstream 583984 4729017 ~ 4734988 (+)
XLOC_004484 NA non-coding downstream 603538 4748571 ~ 4751852 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location