RNA id: TCONS_00008952


Basic Information

Item Value
RNA id TCONS_00008952
length 3411
RNA type mRNA
GC content 0.43
exon number 30
gene id XLOC_004473
representative True

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 4114401 ~ 4145033 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGATGGATTGGTACTCCTACATCAGTTTATGCATCTTCTGTGTGCCTCAGTCAGTGATGACTTTTAACGTGGATCATGCTGCCTGGAAAACTTTCACTGCACCACTGACCAATAATGTTGCCTTTGGCTACAAGGTGATACAAGAAGACATGACAAGACTGACTGTGAGTGATCCTTTAATTCAAATCAATCGTGATGAAAGAGGACAGATTTATAGTTGTGATGTCAATCGAGGAACCTGCTCATCATTGAATATTTATGGTAGAGTTCCCTCTGAAGCAGTCAACATGTCTTTAGGACTTTCCATGGTTAAAGATCCAGGCTCTTCAAAGCTGGTGGTTTGTGGTCCAACCATTCCAAAGAACTGTCCAGGAGTGTCCACCTACAATGGCATGTGCTTTGTTAATGAACACAGAAGAAGTTTTACAGGTCCAATACCCAGCTCTCTGAGAGAATGCCCCAAATCACAAATTGATATTGCTTTTTTATTGGATGGATCTGGAAGTGTAGATCCTGTGGATTTTAATAAGATGAAGGCTTTTGTTGTAGAAATGATCAAGAGTTTTATAGACCGTGACACACAGTTTGCAATAGCACAGTTTTCTACAGAATGTGTCATTCATTACAAGTTTCAACAAGTCAAAAACCCTGCCTGGTGGCAAAGAGCAGTGAATGGGATACAACAAACACATGGATGGACTTTCACTGCAACAGCTATAAGACTGCTTGTGGAGTCATTATTTGTAAGTAGTGGAGGTGCAAGACAATCAGCCAGTAAAATTCTGGTCGTCATCACGGATGGAGAATCAAACGATAAATTTTTGACTGAAGCTGTTCAacaagcacaagaaaaaagtaTAACACGATATGCAATTGGGGTCGGTAATGCTTTCAATAAATACAGTGCAAGAAATGAGCTAACGGTTATTGCATCCATACCCACCGATAAGCATGTGTTCAAAGTTACCGATTTTGATGCTCTGGAAAGCATTCGGGAAATACTTAAAGAGAACATTATTGCCATCGAAGGAACCCAGACGTCTGGAGATTCATCTCGAATGGAGTTTGCACAGGATGGGTTTAGTGCAGCACTGACATCAGATACGGATTTGATCATGACTGCAGTTGGAGCTTTTCAGTGGAAAGGTGGATATCAGCTCTTCAAATTAAACGACCAGACAAGTGTCTTTCAAGCTGGAAGTGAGCATAACAGTTATTTAGGTTACTCCCTGGCAATAGCGACAGTGTATAATACGAAGTATGCAGTCATGGGGGCGCCAAGACACAAGCATGAAGGACTAGTTACAGTTACACGAATTGATCGAATGAGCGATCAAATCCAACTGGATCCTCCCAAGACTCAGATTGGCTCTTATTTTGGAGCTGAGGTGTGTGTGGTGGATTTGAACAGTGACTCTAATACAGATCTGCTTCTGGTATCAGCACCGACATACACAGAGTCTGAGCGAGAGGGGAAAGTGTTTGTTTATAGCTACACACGTCGGCCATTCTTCAGTTTTTCTGATGTGGTGCTGGTGGGCATGGCCGGTCAGAGGGGTCGATTCGGCTCTTCTCTGGCCAGTCCAGCAGATCTGAATGGTGATGGTTTTAAGGATGTGCTGGTTGGTGCACCGTTAGAGGAGGATGGAAAGGGTAGCATCTACATCTTCAATGGACGAGATGGAGGGATCATTTCATCATACTCCCAGAGGATTGCTGGATCATCTGTGCAGTCAGGATTGCAGTACTTTGGTGTTTCCTTGAGTCAATCCTCTCCAGACCAGACTGCAGACAGCCTTCCTGACATTGCTGTTGGGTCCAAAGGAGCAGTTCTGCTTCTCAGGTCCAGACCCATCATGCTCTTGGAAACAAAAGTGTCTTACAACCCATCCAAAATATCAACTGGTCACACAGATTGCAAAAACCAATTGCAGACCACTCTGATCGTGTGCTTCACCATGAAAGGATACAGGCATCACAAAAGAGATTTGAATGCAAAAATTACTTACAACATAACTCTGGATGCTAAGAGACAGAATCATCGAGCATTCTTCTCAGCCAAAGACAATCTCCTCAGTAATGTGATTGACATTGGGAATACAGAAGTTTGCAAAAATCATGATTTCTTAATAGAGGCTTGTCCAGAAGATGCTCTGAATCCATTGTCCAATCAGTTAAAATTCACCTTTGAGGGTCTGCCATCTAGTCAAATGCAAAACCTGAGGCCAATACTGCTGCCAGAGATAAAGACCACCTCAGATCACGATCTGGATTTTGAGAGAGAATGTGGAAAAGATAATGTATGTGTTGATAATCTCAGAGTGGATTTCAATTTCTCTGGATCTACTAATATAGAAGTGGGGATAATGCAGGAGATCAACGTGACGGTGTTTGTCGAGAACAGAGGAGAAAACTCATACAACACACACTTCACCCTCAATTACCCATATGGATTTTCATACAGGAGAATCACATCAAAACAGGGCAGAGTAGAGTGTTCGTCTCTGGATGGAGAGCAAGGGGTTCGACTGGGAGAAACTGAATGCGCCATCAGTAAACCCATCCTCAAGGATAATACTAAGATTGTGTTTGAGATTACGTACAGCATTAATAAAGAAGTTACACTGGGACAAAACGTGATATTCAGTGCTTCAGTCAAGAGTGGGAATGACAAACACTCTGAAAGCAGCGAGTTATCGAAAAAGAAAAGCATTGATGTGAAATATGGCATCTATGTCGCCCTGATCCGGCATGAAAATTCCACCATCCACATCAACTTTACTTCAGGGAAGAAGGATCTTTCAAAACCCGTCCAGCAGACAATAAAGATTGAAAATGACCTCAGACCGTTAGCTTTCACAGCTTTCATCAGAGTACCATTGAAGCTTGGTGATACCGACATCTGGAAAGAATCTACTTTGCAAGTTTCTGACTGTGTGAAAAATAAAACGGAGAAGCCTAGTGTTACAAATTATATGGATGATATTAAAAAACATCATGTACTGaACTGCAGTGTGGCGGTGTGTGCCGTGTTTATCTGTGATGTCAATCTCATAAAGAATGAAAGGAAGCTCTATAATATTACTGGCAATGTGAGCTCTGCGTGGATTGAGCAGACTGGACTCAAAAGCGCTGTGTTTGAGCTGGTCAGTACAACCACTATGGATTACGACATGAGCACATATGTTTTCTTTTCCTCGGATTCCAGAAACACGGCGCCGTCTTTACAGATCAGCACTCAGGTGGAGGTTTATGAGGAGGTGGACCTGACAAAGGAGATCATTGGAGGAGTGATTGGAGGACTTGTGCTGCTGGCTCTCATCACTGCGGCCCTCTATAAGGCTGGGTTCTTCAAAAGCCAGTACAAGCAGATGATGGAGGAGGCACAGGGAGAAGAAGCGCCACAATAA

Function

GO:

id name namespace
GO:0007229 integrin-mediated signaling pathway biological_process
GO:0007155 cell adhesion biological_process
GO:0008305 integrin complex cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-110411-175 Predicted to enable metal ion binding activity. Predicted to act upstream of or within cell adhesion and integrin-mediated signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of integrin complex. Human ortholog(s) of this gene implicated in lupus nephritis. Orthologous to several human genes including ITGAX (integrin subunit alpha X).

Ensembl:

ensembl_id ENSDART00000153699

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00010718 lncRNA upstream 10106 4103788 ~ 4106410 (+) True XLOC_004472
TCONS_00010717 lncRNA upstream 22943 4092452 ~ 4093573 (+) True XLOC_004471
TCONS_00010873 lncRNA upstream 125093 3986191 ~ 3991423 (+) False XLOC_004469
TCONS_00010876 lncRNA downstream 264998 4408659 ~ 4450452 (+) True XLOC_004478
TCONS_00010877 lncRNA downstream 284462 4428123 ~ 4473148 (+) True XLOC_004479
TCONS_00010878 lncRNA downstream 585356 4729017 ~ 4734988 (+) True XLOC_004483
TCONS_00010879 lncRNA downstream 604910 4748571 ~ 4751852 (+) True XLOC_004484
TCONS_00010880 lncRNA downstream 691188 4834849 ~ 4835314 (+) True XLOC_004485
TCONS_00008950 mRNA upstream 72384 4036409 ~ 4044132 (+) True XLOC_004470
TCONS_00008949 mRNA upstream 193446 3912544 ~ 3923070 (+) True XLOC_004468
TCONS_00008948 mRNA upstream 206778 3875901 ~ 3909738 (+) True XLOC_004467
TCONS_00008947 mRNA upstream 226300 3871452 ~ 3890216 (+) False XLOC_004467
TCONS_00008946 mRNA upstream 255282 3848114 ~ 3861234 (+) True XLOC_004466
TCONS_00008953 mRNA downstream 4053 4147714 ~ 4157240 (+) False XLOC_004474
TCONS_00008954 mRNA downstream 5451 4149112 ~ 4157153 (+) True XLOC_004474
TCONS_00008955 mRNA downstream 17143 4160804 ~ 4167750 (+) True XLOC_004475
TCONS_00008956 mRNA downstream 76692 4220353 ~ 4238699 (+) False XLOC_004476
TCONS_00008957 mRNA downstream 79193 4222854 ~ 4238827 (+) False XLOC_004476
TCONS_00008894 other upstream 3594694 509947 ~ 521822 (+) True XLOC_004427
TCONS_00008960 other downstream 353703 4497364 ~ 4497479 (+) True XLOC_004480
TCONS_00008972 other downstream 907901 5051562 ~ 5051697 (+) True XLOC_004492
TCONS_00008973 other downstream 908782 5052443 ~ 5052578 (+) True XLOC_004493
TCONS_00008974 other downstream 913560 5057221 ~ 5057356 (+) True XLOC_004494
TCONS_00008975 other downstream 917906 5061567 ~ 5061697 (+) True XLOC_004495

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000047_03873674_03934985.mRNA False 5648 mRNA 0.43 49 CI01000047 3873459 ~ 3935129 (-)