RNA id: TCONS_00008884


Basic Information

Item Value
RNA id TCONS_00008884
length 654
RNA type mRNA
GC content 0.58
exon number 6
gene id XLOC_004418
representative True

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 47439 ~ 49920 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGCAGATCACGTGAGGCATCTCCGTCCAACATGGCGGCGCCCGCAGTGTGCAGTTTCTCCCCGCTGGTGTGTGCGTGCCGGTGGAGATTAACGGGAATAACGGCGCTCAGCAGCGGCACCGCGGGAATCCAGCACCGGCCCGGGATCGGTTTCTGCCCCGCCAGAGCCGCGGCGCGGAGCACACAGGACCAGCAGCTCACACACATCCCTGTAGATAAACTGAAGGTCTCCTACAGCCGCAGCAGTGGAGCAGGCGGTCAGCACGTCAACAAAGTCAACACAAAAGCAGAGGTGCGTTTCCACGTGCAGACGGCGGACTGGCTTCCAGAGACCCTGAAGAGCCAGATTCTGCTGAAGCACCAGTCGCGCATTAACAAAGCCGGAGAGCTGTTTGTGCGCTCAGAGATCAGCCGCAGCCAGCGGAGGAACCTGCAGGAGTGTGTGCAGAAGCTCACAGCGCTGATCCAGGAGGCGGAGCAGCAGGAGGCGGAGCCAAGCCCGGAGGACCAGGAGCTGTGGAAGAAcagGTTAAATAAGAGGAATCTGGAAAGACTCAAGCAGAAGAAGATCCACTCTGCTACTAAGCGAGCGAGGCGACCAGACTTCGACTGACCAGCAGCATCTGATCTGGagttcaataaaatattaaatcac

Function

GO:

id name namespace
GO:0006415 translational termination biological_process
GO:0070126 mitochondrial translational termination biological_process
GO:0005762 mitochondrial large ribosomal subunit cellular_component
GO:0003747 translation release factor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-121214-202 Predicted to enable aminoacyl-tRNA hydrolase activity and translation release factor activity, codon nonspecific. Predicted to be involved in mitochondrial translational termination. Predicted to act upstream of or within translational termination. Predicted to be part of mitochondrial large ribosomal subunit. Orthologous to human MRPL58 (mitochondrial ribosomal protein L58).

Ensembl:

ensembl_id ENSDART00000114732

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00010711 lncRNA downstream 15724 65644 ~ 67780 (+) False XLOC_004419
TCONS_00010712 lncRNA downstream 15740 65660 ~ 67780 (+) True XLOC_004419
TCONS_00010713 lncRNA downstream 148696 198616 ~ 202640 (+) True XLOC_004420
TCONS_00010857 lncRNA downstream 230221 280141 ~ 281265 (+) True XLOC_004421
TCONS_00010858 lncRNA downstream 237513 287433 ~ 288561 (+) True XLOC_004422
TCONS_00008885 mRNA downstream 147504 197424 ~ 200452 (+) False XLOC_004420
TCONS_00008886 mRNA downstream 242532 292452 ~ 330202 (+) True XLOC_004423
TCONS_00008887 mRNA downstream 266318 316238 ~ 319392 (+) True XLOC_004424
TCONS_00008888 mRNA downstream 337930 387850 ~ 408076 (+) False XLOC_004425
TCONS_00008889 mRNA downstream 340131 390051 ~ 406495 (+) True XLOC_004425
TCONS_00008894 other downstream 460027 509947 ~ 521822 (+) True XLOC_004427
TCONS_00008960 other downstream 4447444 4497364 ~ 4497479 (+) True XLOC_004480
TCONS_00008972 other downstream 5001642 5051562 ~ 5051697 (+) True XLOC_004492
TCONS_00008973 other downstream 5002523 5052443 ~ 5052578 (+) True XLOC_004493
TCONS_00008974 other downstream 5007301 5057221 ~ 5057356 (+) True XLOC_004494

Expression Profile

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