XLOC_000448 (spcs3)


Basic Information

Item Value
gene id XLOC_000448
gene name spcs3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 38818268 ~ 38822167 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00000784
GGAAGTAGGTCTTTGCTTCCGAATCATCTTTTGACTTCCTCACTTCCTGCGTTAAACAGCCGCTCAGAGTGTTtcatttacagtgtatttactattgctctatttttttattagttcgCTCAAATCTAGACTGGATCATGAACACGGTTTTGTCGAGGGCGAACTCGCTCTTCGCCTTCTCTCTCAGTGTAATGGCGGCTCTCACATTCGGATGCTTTATCACGACAGCCTTCAAAGACAGAAGCGTACCGGTTGATATACACGTATCCAAAGTCATGATTAAAAATGTAGACGACTTCACGGGACCACGAGAAAGGAGTGACTTGGGCTTTGTGACATTTGATCTTTTTGCTAATCTACAGCCAATATTTGACTGGAATGTAAAGGAGCTCTTTCTTTATCTGACAGCTGAATATTCAACCAAAAGCAATACACTGAACCAGGTGGTGCTGTGGGACAAAATTGTCCTGAGAGGTGACAATACCAAACTAAACCTGAAGGATGTTAAATCGAAGTACTTCTTCTTCGATGATGGAAATGGTTTAAGGGCGAATAAGAACATCACTCTGACTCTCTCCTGGAATGTGGTGCCAAATGCTGGAATCCTGCCATTGGTCATGGGATCAGGGCACAAAAGTCTCGCCTTCCCTGAAACATATGAAACAGCAAAGAGCTACTGAACTGTACCAGCCCATCCGAAACCATGTTTGTAAATGTTGTGCTCTGTACGGATTTTAATAAAAGTTGACAAATTGTTTTAA
>TCONS_00000785
TCCTGCGTTAAACAGCCGCTCAGAGTGTTtcatttacagtgtatttactattgctctatttttttattagttcgCTCAAATCTAGACTGGATCATGAACACGGTTTTGTCGAGGGCGAACTCGCTCTTCGCCTTCTCTCTCAGTGTAATGGCGGCTCTCACATTCGGATGCTTTATCACGACAGCCTTCAAAGACAGAAGCGTACCGGTTGATATACACGTATCCAAAGTCATGATTAAAAATGTAGACGACTTCACGGGACCACGAGAAAGGAGTGACTTGGGCTTTGTGACATTTGATCTTTTTGCTACTACAGCCAATATTTGACTGGAATGTAAAGGAGCTCTTTCTTTATCTGACAGCTGAATATTCAACCAAAAGCAATACACTGAACCAGGTGGTGCTGTGGGACAAAATTGTCCTGAGAGGTGACAATACCAAACTAAACCTGAAGGATGTTAAATCGAAGTACTTCTTCTTCGATGATGGAAATGGTTTAAGGGCGAATAAGAACATCACTCTGACTCTCTCCTGGAATGTGGTGCCAAATGCTGGAATCCTGCCATTGGTCATGGGATCAGGGCACAAAAGTCTCGCCTTCCCTGAAACATATGAAACAGCAAAGAGCTACTGAACTGTACCAGCCCATCCGAAACCATGTTTGTAAATGTTGTGCTCTGTACGGATTTTAATAAAAGTTGACAAATTGTT
>TCONS_00000786
aagttggagctgaaatctgcaagacaccgaccctcaaggactgagtttggacacccctgagCCAATATTTGACTGGAATGTAAAGGAGCTCTTTCTTTATCTGACAGCTGAATATTCAACCAAAAGCAATACACTGAACCAGGTGGTGCTGTGGGACAAAATTGTCCTGAGAGGTGACAATACCAAACTAAACCTGAAGGATGTTAAATCGAAGTACTTCTTCTTCGATGATGGAAATGGTTTAAGGGCGAATAAGAACATCACTCTGACTCTCTCCTGGAATGTGGTGCCAAATGCTGGAATCCTGCCATTGGTCATGGGATCAGGGCACAAAAGTCTCGCCTTCCCTGAAACATATGAAACAGCAAAGAGCTACTGAACTGTACCAGCCCATCCGAAACCATGTTTGTAAATGTTGTGCTCTGTACGGATTTTAATAAAAGTTGACAAATTGTT

Function

symbol description
spcs3 Predicted to enable peptidase activity. Predicted to be involved in protein targeting to ER and signal peptide processing. Predicted to be located in endoplasmic reticulum and membrane. Predicted to be integral component of membrane. Predicted to be part of signal peptidase complex. Orthologous to human SPCS3 (signal peptidase complex subunit 3).

GO:

id name namespace
GO:0006465 signal peptide processing biological_process
GO:0045047 protein targeting to ER biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0005787 signal peptidase complex cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008233 peptidase activity molecular_function

KEGG:

id description
ko03060 Protein export

ZFIN:

id description
ZDB-GENE-040426-2206 Predicted to enable peptidase activity. Predicted to be involved in protein targeting to ER and signal peptide processing. Predicted to be located in endoplasmic reticulum and membrane. Predicted to be integral component of membrane. Predicted to be part of signal peptidase complex. Orthologous to human SPCS3 (signal peptidase complex subunit 3).

Ensembl:

ensembl_id ENSDARG00000089976

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00000784 False 761 mRNA 0.42 5 38818268 38822167
TCONS_00000785 False 711 nonsense_mediated_decay 0.42 5 38818312 38822163
TCONS_00000786 True 456 processed_transcript 0.43 4 38819577 38822163

Neighbor

gene id symbol gene type direction distance location
XLOC_000447 wdr17 coding upstream 14773 38758261 ~ 38803495 (+)
XLOC_000446 BX649481.1 coding upstream 65239 38665754 ~ 38753029 (+)
XLOC_000445 cep44 coding upstream 443469 38362348 ~ 38374799 (+)
XLOC_000444 NA coding upstream 472160 38343320 ~ 38346108 (+)
XLOC_000442 NA coding upstream 494233 38171857 ~ 38324035 (+)
XLOC_000449 NA coding downstream 27462 38849629 ~ 39022832 (+)
XLOC_000450 CU915762.1 coding downstream 36232 38858399 ~ 38859425 (+)
XLOC_000451 NA coding downstream 210973 39033140 ~ 39033591 (+)
XLOC_000452 NA coding downstream 238270 39060437 ~ 39200709 (+)
XLOC_000453 tenm3 coding downstream 565709 39387876 ~ 39779913 (+)
XLOC_000443 NA non-coding upstream 631074 38183799 ~ 38187194 (+)
XLOC_000440 CT583668.1 non-coding upstream 821691 37996459 ~ 37996577 (+)
XLOC_000454 BX322797.1 non-coding downstream 691574 39513741 ~ 39513857 (+)
XLOC_000455 BX324208.1 non-coding downstream 787666 39609833 ~ 39609950 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000049_05910501_05913204 SPCS3.L, SPCS3 coding CI01000049 null 5910501 ~ 5913261 (+)