RNA id: TCONS_00000784


Basic Information

Item Value
RNA id TCONS_00000784
length 761
RNA type mRNA
GC content 0.42
exon number 5
gene id XLOC_000448
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 38818268 ~ 38822167 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGAAGTAGGTCTTTGCTTCCGAATCATCTTTTGACTTCCTCACTTCCTGCGTTAAACAGCCGCTCAGAGTGTTtcatttacagtgtatttactattgctctatttttttattagttcgCTCAAATCTAGACTGGATCATGAACACGGTTTTGTCGAGGGCGAACTCGCTCTTCGCCTTCTCTCTCAGTGTAATGGCGGCTCTCACATTCGGATGCTTTATCACGACAGCCTTCAAAGACAGAAGCGTACCGGTTGATATACACGTATCCAAAGTCATGATTAAAAATGTAGACGACTTCACGGGACCACGAGAAAGGAGTGACTTGGGCTTTGTGACATTTGATCTTTTTGCTAATCTACAGCCAATATTTGACTGGAATGTAAAGGAGCTCTTTCTTTATCTGACAGCTGAATATTCAACCAAAAGCAATACACTGAACCAGGTGGTGCTGTGGGACAAAATTGTCCTGAGAGGTGACAATACCAAACTAAACCTGAAGGATGTTAAATCGAAGTACTTCTTCTTCGATGATGGAAATGGTTTAAGGGCGAATAAGAACATCACTCTGACTCTCTCCTGGAATGTGGTGCCAAATGCTGGAATCCTGCCATTGGTCATGGGATCAGGGCACAAAAGTCTCGCCTTCCCTGAAACATATGAAACAGCAAAGAGCTACTGAACTGTACCAGCCCATCCGAAACCATGTTTGTAAATGTTGTGCTCTGTACGGATTTTAATAAAAGTTGACAAATTGTTTTAA

Function

GO:

id name namespace
GO:0006465 signal peptide processing biological_process
GO:0045047 protein targeting to ER biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0005787 signal peptidase complex cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008233 peptidase activity molecular_function

KEGG:

id description
ko03060 Protein export

ZFIN:

id description
ZDB-GENE-040426-2206 Predicted to enable peptidase activity. Predicted to be involved in protein targeting to ER and signal peptide processing. Predicted to be located in endoplasmic reticulum and membrane. Predicted to be integral component of membrane. Predicted to be part of signal peptidase complex. Orthologous to human SPCS3 (signal peptidase complex subunit 3).

Ensembl:

ensembl_id ENSDART00000166864

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003094 lncRNA upstream 472160 38343320 ~ 38346108 (+) True XLOC_000444
TCONS_00000776 lncRNA upstream 494233 38263693 ~ 38324035 (+) True XLOC_000442
TCONS_00000775 lncRNA upstream 539834 38263693 ~ 38278434 (+) False XLOC_000442
TCONS_00003093 lncRNA upstream 540017 38262700 ~ 38278251 (+) False XLOC_000442
TCONS_00003092 lncRNA upstream 631074 38183799 ~ 38187194 (+) True XLOC_000443
TCONS_00003095 lncRNA downstream 27462 38849629 ~ 39021860 (+) False XLOC_000449
TCONS_00000788 lncRNA downstream 106469 38928636 ~ 38995761 (+) False XLOC_000449
TCONS_00000789 lncRNA downstream 106469 38928636 ~ 39021700 (+) False XLOC_000449
TCONS_00000790 lncRNA downstream 106469 38928636 ~ 39022832 (+) False XLOC_000449
TCONS_00003096 lncRNA downstream 106649 38928816 ~ 39021860 (+) True XLOC_000449
TCONS_00000783 mRNA upstream 14773 38776294 ~ 38803495 (+) True XLOC_000447
TCONS_00000781 mRNA upstream 15620 38758445 ~ 38802648 (+) False XLOC_000447
TCONS_00000780 mRNA upstream 15846 38758261 ~ 38802422 (+) False XLOC_000447
TCONS_00000782 mRNA upstream 15846 38775041 ~ 38802422 (+) False XLOC_000447
TCONS_00000778 mRNA upstream 443469 38362412 ~ 38374799 (+) True XLOC_000445
TCONS_00000787 mRNA downstream 36232 38858399 ~ 38859425 (+) True XLOC_000450
TCONS_00000791 mRNA downstream 565709 39387876 ~ 39491773 (+) False XLOC_000453
TCONS_00000792 mRNA downstream 565709 39387876 ~ 39776719 (+) False XLOC_000453
TCONS_00000793 mRNA downstream 660421 39482588 ~ 39493825 (+) False XLOC_000453
TCONS_00000795 mRNA downstream 730873 39553040 ~ 39779913 (+) False XLOC_000453
TCONS_00000779 other upstream 65239 38665754 ~ 38753029 (+) True XLOC_000446
TCONS_00000777 other upstream 443469 38362348 ~ 38374799 (+) False XLOC_000445
TCONS_00000769 other upstream 821691 37996459 ~ 37996577 (+) True XLOC_000440
TCONS_00000744 other upstream 1694496 37123642 ~ 37123772 (+) True XLOC_000432
TCONS_00000740 other upstream 2071699 36728297 ~ 36746569 (+) True XLOC_000429
TCONS_00000794 other downstream 691574 39513741 ~ 39513857 (+) True XLOC_000454
TCONS_00000797 other downstream 787666 39609833 ~ 39609950 (+) True XLOC_000455
TCONS_00000798 other downstream 872227 39694394 ~ 39697491 (+) False XLOC_000453
TCONS_00000799 other downstream 878392 39700559 ~ 39713394 (+) True XLOC_000453
TCONS_00000800 other downstream 1015489 39837656 ~ 39837783 (+) True XLOC_000456

Expression Profile

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