RNA id: TCONS_00000788


Basic Information

Item Value
RNA id TCONS_00000788
length 621
lncRNA type lincRNA
GC content 0.37
exon number 3
gene id XLOC_000449
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 38849629 ~ 39022832 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTACCATACCTTTGATAAGCAATAAGTGAAGaagagaatgaatgaaaattgttaGAAggttactttgtttattttattttattttattttattattatttttttgtttacgtGTTATAACTTCTAAAAACATTAAACTATAATGCCAGGGGTAAGCTGACAGTGCGGCAGGTACAGTAGGCTTACCTTTTATTTTGAGACTGCATTGCCGCTATCCTGATGCTCACGCTTTGATGCCACACACGTGCTCCTCGCTAACTTAACTTACGTAAACAAACATCAATCCCGCGGGCGAGAATTCGTATTTGTGGATGATTGTGAGTTAGCAACGATtatatttcagtatgtttatacaacaataaacatatttaaaatatgtttagagCTTGACATCTTGCATTCCTCATGTGCCAAACTTCATGACTTGTTGAAACTACACGAGGatTTCCAGGTTTATCTGATGTGCTGTGACATATACAGAAAATCTCATCGCGCTGCAGTTTTCATCCATCTCAGAATGTGCTGCTGCTCTGAACGTATCTTTGGGCTGTAGCGTTGTGACTGTGTTCCAAGAAATCCATTTACTCTTTTAAAGTCGACACTGAAGAGGCTTGTTCACGCT

Function

GO:

id name namespace
GO:0098534 centriole assembly biological_process
GO:0031023 microtubule organizing center organization biological_process
GO:0007098 centrosome cycle biological_process
GO:0007099 centriole replication biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDART00000194306

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003094 lncRNA upstream 582528 38343320 ~ 38346108 (+) True XLOC_000444
TCONS_00000776 lncRNA upstream 604601 38263693 ~ 38324035 (+) True XLOC_000442
TCONS_00000775 lncRNA upstream 650202 38263693 ~ 38278434 (+) False XLOC_000442
TCONS_00003093 lncRNA upstream 650385 38262700 ~ 38278251 (+) False XLOC_000442
TCONS_00003092 lncRNA upstream 741442 38183799 ~ 38187194 (+) True XLOC_000443
TCONS_00002858 lncRNA downstream 37379 39033140 ~ 39033591 (+) True XLOC_000451
TCONS_00003097 lncRNA downstream 64676 39060437 ~ 39064003 (+) False XLOC_000452
TCONS_00003098 lncRNA downstream 64676 39060437 ~ 39200709 (+) False XLOC_000452
TCONS_00002859 lncRNA downstream 176800 39172561 ~ 39173472 (+) False XLOC_000452
TCONS_00003099 lncRNA downstream 177487 39173248 ~ 39200709 (+) True XLOC_000452
TCONS_00000787 mRNA upstream 69211 38858399 ~ 38859425 (+) True XLOC_000450
TCONS_00000784 mRNA upstream 106469 38818268 ~ 38822167 (+) False XLOC_000448
TCONS_00000783 mRNA upstream 125141 38776294 ~ 38803495 (+) True XLOC_000447
TCONS_00000781 mRNA upstream 125988 38758445 ~ 38802648 (+) False XLOC_000447
TCONS_00000780 mRNA upstream 126214 38758261 ~ 38802422 (+) False XLOC_000447
TCONS_00000791 mRNA downstream 392115 39387876 ~ 39491773 (+) False XLOC_000453
TCONS_00000792 mRNA downstream 392115 39387876 ~ 39776719 (+) False XLOC_000453
TCONS_00000793 mRNA downstream 486827 39482588 ~ 39493825 (+) False XLOC_000453
TCONS_00000795 mRNA downstream 557279 39553040 ~ 39779913 (+) False XLOC_000453
TCONS_00000796 mRNA downstream 602048 39597809 ~ 39777447 (+) False XLOC_000453
TCONS_00000785 other upstream 106473 38818312 ~ 38822163 (+) False XLOC_000448
TCONS_00000786 other upstream 106473 38819577 ~ 38822163 (+) True XLOC_000448
TCONS_00000779 other upstream 175607 38665754 ~ 38753029 (+) True XLOC_000446
TCONS_00000777 other upstream 553837 38362348 ~ 38374799 (+) False XLOC_000445
TCONS_00000769 other upstream 932059 37996459 ~ 37996577 (+) True XLOC_000440
TCONS_00000794 other downstream 517980 39513741 ~ 39513857 (+) True XLOC_000454
TCONS_00000797 other downstream 614072 39609833 ~ 39609950 (+) True XLOC_000455
TCONS_00000798 other downstream 698633 39694394 ~ 39697491 (+) False XLOC_000453
TCONS_00000799 other downstream 704798 39700559 ~ 39713394 (+) True XLOC_000453
TCONS_00000800 other downstream 841895 39837656 ~ 39837783 (+) True XLOC_000456

Expression Profile

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