RNA id: TCONS_00000780


Basic Information

Item Value
RNA id TCONS_00000780
length 4129
RNA type mRNA
GC content 0.50
exon number 30
gene id XLOC_000447
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 38758261 ~ 38803495 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGAAGCATGGGATCCCGAGCACCTCCCTGAGCGAAGATTACACGGATTTGGTCTATGATTTGCGTTGATTGACTGGGCGAATGACCAATCAGCGTTCAAATGCACGGTCGGTGTGAAACGTCAGGTTCGAATCGACCAATCGTCGCAATGAATCCTAAGCAGCGCTGACAAACTATATGGACCAAGCGTTTCTCCGTCAGCGGTACACCTAATCTCAGCACCAGGTCGCTGTCCACTGACAACGACAGAGATAAAGATGTCTCAGGTGAAGCAGGTTGGCCTGTTGGCCGCTGGATGTCAGCCCTGGAATAAAGACGTGTGTGCTGCCAGTGGGGATAGATTTGCATATTGTGCCACGCTCGCCATATATGTGTACCAACTTGATCACAGATATAACGAGTTTAAGCTGCGAGCGATCATGTCCGAACACAAGAAGACAATCACAGCTATATCGTGGTGTCCACACAACCCTGAGGTGTTTGCCAGTGCCAGCGCTGATAACCTGCTCATCATCTGGAATGTGGCTGAGCAGAAGGCTGTCGCAAGGCTAGATAACACCAAAGGTATCCCAGCATCTCTAAGCTGGTGCTGGAACGCAGGCGACAGTGTTGCGTTCGTATCCCACCGGGGTCCTCTCTATATTTGGACAGTCTCGGGGCCAGACTCAGGAGTCACAGTGCACAAGGAGGCTCACAGTTTCCTCTCAGACATCTGCCTTTTCCGCTGGCATCCACTGAAGAAGGGGAAAGTAGTGTTTGGACACACTGATGGCAGTTTGTCTATCTTTCAACCAGGCTCAAAGCATCAGAAGCATGTACTGCGTCCAGAGTCATTGGAAGGCACAGATGAGGAGGATCCCATCACCGCTTTAGAGTGGGACCCTCTCAGCACAGACTACCTACTGGTTGCCAACATGCACAACGGCATCAGACTACTGGATTCTGAGTCTCTATGTTGCATCACAACCTTTAGTTTTCCCAGCGCTGCTGCATCAGTGCAGTGCCTGGCCTGGGTGCCCAGCGCCCCTGGCATGTTTATTACAGGGGATTCTCAAGTTGGTGTGCTGAGAATATGGAACGTATCACGAGCGACTCCTCTGGATAACTTCAAACTGAAGAAAACTGGCTTCCACGCACTTCATGTTTTAAACTCCCCACCAGCAAagaaatCCTTTAGCTCGAATTCTCCTTCCAAGAATCACTACACCTCCTCCACTAGCGAGGCCGTGCCTCCACCCACTCTTTCCCAAAACCAGGCCTTCTCTCTCCCACCCGGTCACGCTGTCTGCTGTTTCATGGATGGAGGGGTTGGACTGTATGATATGGGCGCCAAAAAGTGGGACTTTCTACGTGATCTGGGTCACGTTGAAACTATCTTCGACTGTAAATTCAAGCCAGATGACCCAAACCTTCTAGCTACAGCTTCATTTGACGGGACGATAAAAGTCTGGGATATAAACACACTAACTGCTGTGTACACATCTCCAGGCAATGAGGGAGTAGTTTACTCTCTTTCCTGGGCCCCTGGAGACTTGAACTGCATAGCAGGAGCCACGTCACGGAATGGCGCCTTCATTTGGGATGTTAAAAAGGGGAAAATGATCACAAGATTTAATGAGCATGGGAAAAATGGGATCTTTTGTGTCGCTTGGAGCCATAAAGACTCCAAAAGAATAGCCACATGCAGCGGAGATGGATTTTGCATAATTCGCACCATTGATGGTAAAGTTTTGCACAAATATAAACACCCAGCAGCAGTTTTTGGCTGTGACTGGAGTCAAAACAACAAAGATATGATCGCCACTGGCTGTGAGGACAAGAATGTTCGAGTCTATTACTTGGCCACCAGTTCAGACCAGCCACTGAAAGTTTTTACAGGTCACACTGCCAAAGTGTTCCATGTGCGCTGGTCACCTCTCAGAGAGGGCATACTGTGCAGCGGCTCTGATGATGGGACTGTCCGTATCTGGGATTATACCCAAGACGCTTGCATTAACGTGCTAAGTGGTCACACCGCTCCAGTGCGGGGTCTTATGTGGAACACAGAGGTGCCGTATCTTTTGACCTCAGGGAGCTGGGACTACACCATTCGTGTCTGGGACACCAGAGACGGCACCTGTCTAGACACTGTTTATGACCATGGAGCTGACGTCTACGGTCTGACATGTCACCCCAGTCGTCCATTCACCATGGCTTCCTGCTCCAGAGACTCCACGGTCAGACTTTGGTCACTCACTCCTCTAATCGCTCCCTTAGTAGTCAACATCCTCACTGACCACAGCTGGGACGACATTATTGGCAACACAGATCGTGCTATGGTTCCCGGGGCTCCTCCTTTGTTGTGTGGAAAGGTTTCCCGAGATATCAAACAGGAACTAGATAAACTCTCAAGTGACGTGCGCATGAAGAAGCTGCGGTGGTTCTCCGAGTGTTTCTCCCCACCAGGAGGGAGTCATAACCTGTGGGATCTGGTTGCTGTAATCAACGGACAGGATGATAGTCTTCTTCCGCAGTACTATGGGCAGGGCATCATGCATATGAAACACTTGGTCCGCTTTAAAACTTCTGAAGCACAAGAGCTGACCATTGTAAAGATGTCAAAGTTCGGGGGAGGTATTGGAGCACCGAGTAAAGAGGAAAGGCTCAAGAATGCAGCTGAAATCCATATCAGACTGGGTCAAATCCAGAGATACTGTGAGCTCATGGTGGAACTGGGAGAGtggGAGAAGGCTCTATCCGTGGCCCCTGGTGTTTCCATGAAATACTGGAAAAAGCTCATGCAAAGGAGAGCAGATCAGCTCATGCAAGAGGGCAATGATGATGTCATCCCGTACTGCATCGCCACCGGTGAGGTAAAGAAGCTGGTAAATTTCTTCACCTCCAGAGGTCAGCTGAAGGAAGCTGTGCTTGTGGCTCAGGGTGCCTGTGAAGGGAATATCCATGTCCCTCAGATAACATCAATAAACCATGCAGCAAACTCAGACAATGACAACATAGAAAAGTACTGTGGGATGTTGCACAGAGTGTGTAAAGAGCTGGCAGAGTGGTATTTTCAAGATGGCTGTGCTGTGCTGGCAGGTTGCTGTCACCTAGCTGTAGACAACACAGAACTGGCCCTGGCGTCTCTGATCCGAGGCAATGAGCTGGAGCTGGCGGTGTGTGTGGGCACAGTCCTGGGAGAATCAGCCAGTAAAGCCACCCACTACGTTCTGGAGCTTTTGGCCAGAAAATACATGACCACTGCCACCTGCTTTCCATCTGTGGCACACAGGGATCTTGCAGCCAGATTACTCCAGATGATCCCTGATAATGAGATCTTGTTAGCCAAACTGTGTGCCTTCTACCCTGGCAGCTCTGCCGAAATCAACGACCTGCATGAAAAGtgTGGTCTACCAAGTTTAGAGGAATGTAAAGAGCTTGCTGAAAGTGCACAATCTGAGGGAGAAATCTTCCAGGCAGTAAAGTATTACCTACTAAGCCCAGAACCAGAGAAGGCTCTTCCAATAGGGATCACCTATGTCAAAGAGCAGCTGAGCTCTCCTGACTGGGTGGTGGACTCTGTTTACCAAATCTTAGACCTGTTGAGCTACATCAGAACAGACCGACTTATTCTACCAAAGTGTAGTGAAGAGCGCAACGAGCTGCTTATTCTCTGCGGGTATATTGGTGCACTGTTAGCCATTGGGAGACAGTATTCGAGTATAGTGCCAGCACTGTATGAATACACAAGTCAGCTGCTGAAGAGGAGAGAAGTAGCTGTGCCTTTGCAGATAGAGCAGTTGTCTGTAGAGTTGGAGGCCTGGAGAGCCTGTACACAATCCCTCAAAGTGGCAGATGACAGTTTGTATACTTCACCATCTGAGGCCCAGAAGACAGAGTATAGCCAAATATTGAGTCGAATAAGAGAAGAGCCCATCAAGGGTCTTGAGGGTCCAGACTATGTGACTGGCTCCAACTTACCCAGTCATTCTGATGTCCAGATTTCCTGCTTCACTGGCCTCAGGATACAGGGACCAGCGTTCTTCCTGGAAGACGGCAAATCTGCTATTTCACTCAACGATGCCTTGATGTGGGCAAAAGTGAACCCTTTCTCTCCACTGGGGACGGGCGTACGCCTCAACCCCTTCTGA

Function

GO: NA

KEGG:

id description
ko04990 Domain-containing proteins not elsewhere classified

ZFIN:

id description
ZDB-GENE-090313-131 Acts upstream of or within lens development in camera-type eye. Orthologous to human WDR17 (WD repeat domain 17).

Ensembl:

ensembl_id ENSDART00000182756

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003094 lncRNA upstream 412153 38343320 ~ 38346108 (+) True XLOC_000444
TCONS_00000776 lncRNA upstream 434226 38263693 ~ 38324035 (+) True XLOC_000442
TCONS_00000775 lncRNA upstream 479827 38263693 ~ 38278434 (+) False XLOC_000442
TCONS_00003093 lncRNA upstream 480010 38262700 ~ 38278251 (+) False XLOC_000442
TCONS_00003092 lncRNA upstream 571067 38183799 ~ 38187194 (+) True XLOC_000443
TCONS_00003095 lncRNA downstream 47207 38849629 ~ 39021860 (+) False XLOC_000449
TCONS_00000788 lncRNA downstream 126214 38928636 ~ 38995761 (+) False XLOC_000449
TCONS_00000789 lncRNA downstream 126214 38928636 ~ 39021700 (+) False XLOC_000449
TCONS_00000790 lncRNA downstream 126214 38928636 ~ 39022832 (+) False XLOC_000449
TCONS_00003096 lncRNA downstream 126394 38928816 ~ 39021860 (+) True XLOC_000449
TCONS_00000778 mRNA upstream 383462 38362412 ~ 38374799 (+) True XLOC_000445
TCONS_00000770 mRNA upstream 587355 38142354 ~ 38170906 (+) False XLOC_000441
TCONS_00000773 mRNA upstream 587686 38151262 ~ 38170575 (+) False XLOC_000441
TCONS_00000771 mRNA upstream 591447 38142715 ~ 38166814 (+) False XLOC_000441
TCONS_00000774 mRNA upstream 595685 38153944 ~ 38162576 (+) True XLOC_000441
TCONS_00000784 mRNA downstream 15846 38818268 ~ 38822167 (+) False XLOC_000448
TCONS_00000787 mRNA downstream 55977 38858399 ~ 38859425 (+) True XLOC_000450
TCONS_00000791 mRNA downstream 585454 39387876 ~ 39491773 (+) False XLOC_000453
TCONS_00000792 mRNA downstream 585454 39387876 ~ 39776719 (+) False XLOC_000453
TCONS_00000793 mRNA downstream 680166 39482588 ~ 39493825 (+) False XLOC_000453
TCONS_00000779 other upstream 5232 38665754 ~ 38753029 (+) True XLOC_000446
TCONS_00000777 other upstream 383462 38362348 ~ 38374799 (+) False XLOC_000445
TCONS_00000769 other upstream 761684 37996459 ~ 37996577 (+) True XLOC_000440
TCONS_00000744 other upstream 1634489 37123642 ~ 37123772 (+) True XLOC_000432
TCONS_00000740 other upstream 2011692 36728297 ~ 36746569 (+) True XLOC_000429
TCONS_00000785 other downstream 15890 38818312 ~ 38822163 (+) False XLOC_000448
TCONS_00000786 other downstream 17155 38819577 ~ 38822163 (+) True XLOC_000448
TCONS_00000794 other downstream 711319 39513741 ~ 39513857 (+) True XLOC_000454
TCONS_00000797 other downstream 807411 39609833 ~ 39609950 (+) True XLOC_000455
TCONS_00000798 other downstream 891972 39694394 ~ 39697491 (+) False XLOC_000453

Expression Profile

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