Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00000798 |
| length | 627 |
| RNA type | processed_transcript |
| GC content | 0.50 |
| exon number | 3 |
| gene id | XLOC_000453 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007112.7 |
| NCBI id | CM002885.2 |
| chromosome length | 59578282 |
| location | 39387876 ~ 39779913 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:1903385 | regulation of homophilic cell adhesion | biological_process |
| GO:0030154 | cell differentiation | biological_process |
| GO:0031290 | retinal ganglion cell axon guidance | biological_process |
| GO:0010976 | positive regulation of neuron projection development | biological_process |
| GO:0007601 | visual perception | biological_process |
| GO:0048666 | neuron development | biological_process |
| GO:0070983 | dendrite guidance | biological_process |
| GO:0007155 | cell adhesion | biological_process |
| GO:0007156 | homophilic cell adhesion via plasma membrane adhesion molecules | biological_process |
| GO:0007157 | heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules | biological_process |
| GO:0007165 | signal transduction | biological_process |
| GO:0042995 | cell projection | cellular_component |
| GO:0043005 | neuron projection | cellular_component |
| GO:0030424 | axon | cellular_component |
| GO:0005886 | plasma membrane | cellular_component |
| GO:0005887 | integral component of plasma membrane | cellular_component |
| GO:0016020 | membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0042803 | protein homodimerization activity | molecular_function |
| GO:0046982 | protein heterodimerization activity | molecular_function |
| GO:0050839 | cell adhesion molecule binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-990714-19 | Predicted to enable cell adhesion molecule binding activity; protein heterodimerization activity; and protein homodimerization activity. Acts upstream of or within dendrite guidance; retinal ganglion cell axon guidance; and visual perception. Predicted to be integral component of plasma membrane. Predicted to be active in neuron projection. Is expressed in several structures, including fin bud; immature eye; mesoderm; nervous system; and neural tube. Orthologous to human TENM3 (teneurin transmembrane protein 3). |
| ensembl_id | ENSDART00000132970 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00003098 | lncRNA | upstream | 493685 | 39060437 ~ 39200709 (+) | False | XLOC_000452 |
| TCONS_00003099 | lncRNA | upstream | 493685 | 39173248 ~ 39200709 (+) | True | XLOC_000452 |
| TCONS_00002859 | lncRNA | upstream | 520922 | 39172561 ~ 39173472 (+) | False | XLOC_000452 |
| TCONS_00003097 | lncRNA | upstream | 630391 | 39060437 ~ 39064003 (+) | False | XLOC_000452 |
| TCONS_00002858 | lncRNA | upstream | 660803 | 39033140 ~ 39033591 (+) | True | XLOC_000451 |
| TCONS_00003100 | lncRNA | downstream | 176635 | 39874126 ~ 39875497 (+) | True | XLOC_000458 |
| TCONS_00002860 | lncRNA | downstream | 198897 | 39896388 ~ 39901668 (+) | True | XLOC_000459 |
| TCONS_00000806 | lncRNA | downstream | 297576 | 39995067 ~ 40002203 (+) | True | XLOC_000461 |
| TCONS_00000826 | lncRNA | downstream | 624421 | 40321912 ~ 40322558 (+) | True | XLOC_000472 |
| TCONS_00003101 | lncRNA | downstream | 636467 | 40333958 ~ 40337712 (+) | True | XLOC_000473 |
| TCONS_00000793 | mRNA | upstream | 200569 | 39482588 ~ 39493825 (+) | False | XLOC_000453 |
| TCONS_00000791 | mRNA | upstream | 202621 | 39387876 ~ 39491773 (+) | False | XLOC_000453 |
| TCONS_00000787 | mRNA | upstream | 834969 | 38858399 ~ 38859425 (+) | True | XLOC_000450 |
| TCONS_00000784 | mRNA | upstream | 872227 | 38818268 ~ 38822167 (+) | False | XLOC_000448 |
| TCONS_00000783 | mRNA | upstream | 890899 | 38776294 ~ 38803495 (+) | True | XLOC_000447 |
| TCONS_00000801 | mRNA | downstream | 162291 | 39859782 ~ 39869642 (+) | False | XLOC_000457 |
| TCONS_00000802 | mRNA | downstream | 168257 | 39865748 ~ 39880189 (+) | False | XLOC_000457 |
| TCONS_00000803 | mRNA | downstream | 168262 | 39865753 ~ 39870174 (+) | True | XLOC_000457 |
| TCONS_00000804 | mRNA | downstream | 293056 | 39990547 ~ 39992042 (+) | True | XLOC_000460 |
| TCONS_00000805 | mRNA | downstream | 297517 | 39995008 ~ 40009814 (+) | False | XLOC_000461 |
| TCONS_00000797 | other | upstream | 84444 | 39609833 ~ 39609950 (+) | True | XLOC_000455 |
| TCONS_00000794 | other | upstream | 180537 | 39513741 ~ 39513857 (+) | True | XLOC_000454 |
| TCONS_00000785 | other | upstream | 872231 | 38818312 ~ 38822163 (+) | False | XLOC_000448 |
| TCONS_00000786 | other | upstream | 872231 | 38819577 ~ 38822163 (+) | True | XLOC_000448 |
| TCONS_00000779 | other | upstream | 941365 | 38665754 ~ 38753029 (+) | True | XLOC_000446 |
| TCONS_00000799 | other | downstream | 3068 | 39700559 ~ 39713394 (+) | True | XLOC_000453 |
| TCONS_00000800 | other | downstream | 140165 | 39837656 ~ 39837783 (+) | True | XLOC_000456 |
| TCONS_00000813 | other | downstream | 459416 | 40156907 ~ 40159277 (+) | False | XLOC_000467 |
| TCONS_00000815 | other | downstream | 459419 | 40156910 ~ 40162651 (+) | False | XLOC_000467 |
| TCONS_00000820 | other | downstream | 550836 | 40248327 ~ 40257826 (+) | True | XLOC_000469 |
