XLOC_000459


Basic Information

Item Value
gene id XLOC_000459
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 39896388 ~ 39901668 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00002860
TTTAAAATCATAATGCTAAGGGAAGACATTTCAtggtcatttttatttcatatgaaatattttacaatataaacaAAGCATCCGTCTTGGATGGACTTAACAGCAACCAGAGGCCAGGCATTTCAGTGcaaacgtttttttgtttttgttttgttttttttacaaggcAGTCTTGGCTGCATTACTCCCTTTAGTCTATCAAAAActaatgtgattaaaaaaaataaaaagaaagaaatgattaCCTGATGAAGGAGGGGGCTTCAAATCAAAACGAATGTGACAGACACCCAAAATGCATCCTCTTACAAAGCCTTGCCAAGTAAAGGAAGTGATGTGTTTGTCAGTATTCAAATTCTCCAGAGTTGTATCGATAACTAAAGCGCACTGTACTTGTGTTGAGTAAAGCTCTGTTGAAATGATTCGAAAAGCATCTATTTATAGAGCAGATGCTGTGAGGTGCTTGCTCTGTCTCTGATGTCTAGCAATGATATAAAATTATCATTTAATATACGAGGCTCGTCTTTCCTCAATCTTCATTCCACCTCCAACTACAGGGTCTAAGAGGCTGTTTGGACCCTAACCGCTGACCTCTCACATATTAGGTGGGAATGTGAAAACAATACTTGAGATATCAGTATTGCCATAAAGTGATGAAGTACTTTTGACTGGAGTTTGCCTGGAGTTTATCATATAAAGCATAGTCCCTTGATTGATCTCCATCTTGATGCATTTTTAACAAACTGGGCCTGAAATCATAAAGCAAATAAAGAAATACCCACGTGAAGGGGGACAGCAGACAACTCAAAATGGCGTCATACACAAAAcataaaactgaaaatgtttcATTGATGTGGTGCCAGACAGATTTATACACAACTTGCAAATAAGTAAAAGACACTTCTGTCGAAAaactgagaagaaaaaaaaatagagttgaGTTGAAACTACAGCACTTAATACTGATTACTTTAGAATAAGTCCTCTTAGTTACAGTGTCCGCCGCTCCTTGTCAACATTCACAGAGAAGAGGCTGATAGCGCTGTGTTCCACAGGCAAAGAATCCAAATCTGTACACGTCCCTACCTTGTTGTTACACAGGTGGTGGAGGTAGCTAGTTATGTGCATGTATGTGGGGGTGTAGGGTAGTTTGCatggctgtgtatgtgtgtgtctgtggaaaAATAGTTGGGAGTGAGCTGAAAGTGGTTTAACGTCTTTGATTCAAACACAACCAGAAGTCCCATTGGAGGATATCCACCTGAACACATCGCCGAGCAGTGGATCTGTGAAGGTTATGGCCAATGAGACAAATTAAATGAAAGGTAAAAAGGGAGAAGAAGAATCACCACATGGTAAATTGCAGTAATAGATGTGACTTTTTCTCAGGGATACGACTGGTGCATTCTTAAGATGCTACACCAAACAGTTAAAGCCATAGTCCAAATGTTCAAAGCAagaattttaatgtttaattcaaTCTGGGAATAGGGGCTTTTGCTCATGGTCGTGAGCCTTATACCACACGGCAGGTCAAAATCTGATTTTCATCTCTGACATTTTGAACAGTGGAGAAAATTATTCGTACATAATTTCATTGAATCAGTTGTTCCAacctaaaataagcatttattgaTACGGCTGGGGAGGAATGTGAATATACATGTAATGTGTTGATTTTGAACCATTTCGTTCCATTTAGGTTTGAGTACTGACCGAAACCAGCTCAATTCCCAAGGAAAACAGTgatgcaaaaacaaaataaaacaccaTAGCGGTCTGGATTCAACTCAAGTAAGAAAATCTTTGAAAATAAAGGTTTCTCAAAGCAGCAAAAGGGCAGAGTCTCTGAATTCCACAGGCCCAAAGGAAGAGAACTGTATGAGCTTTCCTCGGAGTGTCGTGGATGTTTTAGACGCAACACCAGTCATTCTCACCATTGCGATTTCCaacatcctcctcctccttttgTGACAACAAACAGAGCCATCAAGCTACACAGAAGACAAGCATGACATCCACAAGAGTCCTGGTTCATGAGACTAGGTTTCCGATTCACACTGGCGTAAAACACACACCTGTTTTTATTTCAAAAGGGAATAACGTCATTAAAACAATTCAGAATTGACCCTAATGTTTGTCCACAGAGAGCAAGAGTTTTATTCCCTTCAGAAACAAAGATTGGTGAAACCATCCACAGAAACATGATTACAGACTGACCAATGTTTTTACCTCTTCTTAGGAGAGTTAACTATTCATGACCTGAGATTAATTATGAACCTTAATGAAACGTCAAGGTGCATACAAAGTAATTGTATGCGACATaagtttgggtaaaaaaaaagcaagaaaagaAAATCTTTTAATTTCAGAAGGAGATCATATTTTTCTCACTAATTCAGCATGTGTTGTTTCAATAAGCACGTGAGCATGACTCTTATTTTACCAATGTATCTAACAGTGCCATGACAAATGGGTTTATTTTTAGgaatattaacagatttatgaatCATGATCGTTTTAACATTGTACTGCATACAAATATCACAAATCTTGAATACCTTTGACCTGCACATCAGCATCGATTTCTTAATGCGTGCAAACGTAATCCATTGGCTGCATGATCTCATTGGCTCGTAATCTGTGACTGATGAAAACAATAtacttctgaaaacaaaacattgttaaatTAGCAGTTACTTCAAGCCTATTATGAAAATAACTGTTGATTCGACTGAAGAATTTCCTGATTAATTGCGTGTTAAGGTAAATCCTATGATGAGAAATTTCCTTTTCCATTTCTtcccttatttttatttt

Function

GO:

id name namespace
GO:0006928 movement of cell or subcellular component biological_process
GO:0016477 cell migration biological_process
GO:0040011 locomotion biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00002860 True 2820 lncRNA 0.37 2 39896388 39901668

Neighbor

gene id symbol gene type direction distance location
XLOC_000457 irf2a coding upstream 16199 39859782 ~ 39880189 (+)
XLOC_000458 NA coding upstream 20891 39874126 ~ 39875497 (+)
XLOC_000456 CU929244.1 coding upstream 58605 39837656 ~ 39837783 (+)
XLOC_000453 tenm3 coding upstream 116475 39387876 ~ 39779913 (+)
XLOC_000455 BX324208.1 coding upstream 286438 39609833 ~ 39609950 (+)
XLOC_000460 sod3b coding downstream 88879 39990547 ~ 39992042 (+)
XLOC_000461 aip coding downstream 93340 39995008 ~ 40009814 (+)
XLOC_000462 lgi2b coding downstream 121972 40023640 ~ 40028859 (+)
XLOC_000463 ccdc149b coding downstream 132393 40034061 ~ 40053012 (+)
XLOC_000464 si:ch211-113e8.11 coding downstream 206143 40107811 ~ 40115242 (+)
XLOC_000454 BX322797.1 non-coding upstream 382531 39513741 ~ 39513857 (+)
XLOC_000452 NA non-coding upstream 695679 39060437 ~ 39200709 (+)
XLOC_000473 NA non-coding downstream 432290 40333958 ~ 40337712 (+)
XLOC_000474 NA non-coding downstream 617673 40519341 ~ 40520445 (+)
XLOC_000477 NA non-coding downstream 746099 40647767 ~ 40649386 (+)
XLOC_000478 FO834828.1 non-coding downstream 761868 40663536 ~ 40671733 (+)
XLOC_000479 FO834828.2 non-coding downstream 781823 40683491 ~ 40692718 (+)

Expression


Co-expression Network