XLOC_000460 (sod3b)


Basic Information

Item Value
gene id XLOC_000460
gene name sod3b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 39990547 ~ 39992042 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00000804
GCATTATGCAAGTATAAAACAGCAACCATAAGCTTTTCAAACGCAAAGGACCAACAACAAAGAAACACGTTTGGCATTAAAAATCAGTTTTTAGTGACGGAACACAAAAAGTGAAGACATGATACGCTTCAACATTTTACCCCTTCTGGCATTCCTGCTCAGTTGCCATGTGCTCTTCTGTGGATCAGGCTCAGGTCTGGCATATGCTTCAAACAGTGATTCCCTTCAGGCCGTATGCAGAATGCAGCCTAACACTCGACTAGAGCCTGGCATGCCTCGTGTGTATGGTCACATTTTATTCAGACAGTCTGGCCCAAAGGAAAAGCTGAGCGTGACTTTCAGGCTCTATGGTCTCCCTGCGGACAGTCAGCAGCCCAGAGCCATGCACATTCATGAGTATGGAGACTTAAGCAGGGGCTGCGACTCTACAGGTGGGCATTACAATCCCCTCAACGTCAACCATCCACAACATCCAGGGGACTTTGGCAACTTTGTGCCCGTTAACAAGAAGATTCGGCAGTCACTGGAATCCCCTGCAACTCTCTTTGGGAAACTTTCAATAGTCGGCCGGTCTGTTGTCATTCATGAGGGAAAGGATGATTTGGGCAGAGGTGGGAATGTGGGAAGCTTGCTGAATGGCAACGCTGGAGGGCGACTGGCATGCTGTGTTATTGGACTGAGAAACCCCCAAAATTAATAGATATTTTTAGCAAAGACTATACAGTTCATTTTTGCAgtatacaatgctcagcatatatgattacacaaatctctcttttaaattcatatttttaaaaggaagctatacaatattatatttgtgcatatacattagattagtcagtactgaagccagatctggagcttatctaaagTTACGATAGCGGttaaaaaactagtacacccaatatgttatagaaaaacattaaatataaattttacaaAGAGGGAaaatcaacagaagaaaaaaaaaaagttggatttATAAAAAGttgtcattaattttttttgcgGTATTTATCTTGAATTTAATagttttatcttttaatttctaaagatgttctgtgtctaaaaaaatattttaaataatatacctgttttgtttaaatgcaccgaaATACTTTGCCTGTACATTAGCAAAATAACTGATGGAATGCATTTAAATATCTAGGTATTGTGTTAAaaacactaaataataataaagattgaGGCTTTTTG

Function

symbol description
sod3b Predicted to enable copper ion binding activity and superoxide dismutase activity. Predicted to be involved in removal of superoxide radicals. Predicted to act upstream of or within superoxide metabolic process. Is expressed in digestive system; female organism; and male organism. Human ortholog(s) of this gene implicated in several diseases, including coronary artery disease (multiple); diabetes mellitus (multiple); diabetic retinopathy; lung disease (multiple); and polyneuropathy. Orthologous to human SOD3 (superoxide dismutase 3).

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0006801 superoxide metabolic process biological_process
GO:0019430 removal of superoxide radicals biological_process
GO:0005576 extracellular region cellular_component
GO:0005615 extracellular space cellular_component
GO:0004784 superoxide dismutase activity molecular_function
GO:0005507 copper ion binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0016491 oxidoreductase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-8743 Predicted to enable copper ion binding activity and superoxide dismutase activity. Predicted to be involved in removal of superoxide radicals. Predicted to act upstream of or within superoxide metabolic process. Is expressed in digestive system; female organism; and male organism. Human ortholog(s) of this gene implicated in several diseases, including coronary artery disease (multiple); diabetes mellitus (multiple); diabetic retinopathy; lung disease (multiple); and polyneuropathy. Orthologous to human SOD3 (superoxide dismutase 3).

Ensembl:

ensembl_id ENSDARG00000079183

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00000804 True 1218 mRNA 0.38 2 39990547 39992042

Neighbor

gene id symbol gene type direction distance location
XLOC_000459 NA coding upstream 88879 39896388 ~ 39901668 (+)
XLOC_000457 irf2a coding upstream 110358 39859782 ~ 39880189 (+)
XLOC_000458 NA coding upstream 115050 39874126 ~ 39875497 (+)
XLOC_000456 CU929244.1 coding upstream 152764 39837656 ~ 39837783 (+)
XLOC_000453 tenm3 coding upstream 210634 39387876 ~ 39779913 (+)
XLOC_000461 aip coding downstream 2966 39995008 ~ 40009814 (+)
XLOC_000462 lgi2b coding downstream 31598 40023640 ~ 40028859 (+)
XLOC_000463 ccdc149b coding downstream 42019 40034061 ~ 40053012 (+)
XLOC_000464 si:ch211-113e8.11 coding downstream 115769 40107811 ~ 40115242 (+)
XLOC_000465 zgc:152658 coding downstream 148456 40140498 ~ 40146782 (+)
XLOC_000455 BX324208.1 non-coding upstream 380597 39609833 ~ 39609950 (+)
XLOC_000454 BX322797.1 non-coding upstream 476690 39513741 ~ 39513857 (+)
XLOC_000473 NA non-coding downstream 341916 40333958 ~ 40337712 (+)
XLOC_000474 NA non-coding downstream 527299 40519341 ~ 40520445 (+)
XLOC_000477 NA non-coding downstream 655725 40647767 ~ 40649386 (+)
XLOC_000478 FO834828.1 non-coding downstream 671494 40663536 ~ 40671733 (+)
XLOC_000479 FO834828.2 non-coding downstream 691449 40683491 ~ 40692718 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000049_06716361_06716960 NA coding CI01000049 null 6716361 ~ 6717446 (+)