XLOC_000463 (ccdc149b)


Basic Information

Item Value
gene id XLOC_000463
gene name ccdc149b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 40034061 ~ 40053012 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00000808
CAATGTTGATGAAATCCGAAACATGTAATCGTGACATCCTCGTCGCAACAGATGCTTACAACGTGACAATTCTTGCAACAGACAGATTTTTTTAGGAGATTATAACCTGTCCGAAAATGAATCCTTCCAGGAGAAGCGAAAGTGATTGGCAGGGTCTGGTGAATGAGTTCCTGGTGTGCAAAAGAAAGCTGGAGAGTAAGAAGGAGGCACTGCTGATCTTATCGAAAGAACTGGACACTTGCCAGCAGGAAAGGGATCAGTTCAAACTGATGGCAAACCAGCTCCGTGAGCGCCACCAAGGCCTGAAGAAAAAGTACAGAGAGCTCATAGATGGTGACCCCTCGCTGCCACCTGAAAAAAGAAACCAAGTCAATCTGGCCCAGTTACTGAGAGACTCACGAGAGCACAACAAACAGCTGAGCGAGGAGCTGAAAGAACTGAAGCAGCGTTTAGCTGAGGTGCATGGGGATAACAAGCTGTTGAGGATGACCATCGCAAAGCAACGTTTAGGGGATGAAGAGGTGGGAACTCGACATTTTCCAGCCCACGAGAGAGAAGATCTCGTTCAGCAGCTGGAAAGAGCTCGAGAACAGACTGAAGCGCTGGAACAAAGCTTAAAGGCAGCCACAGATGAACTTCAGGATGTGAGAGCAGAGCGTAATGTGTACCAGGAGAAAGCTCACAGACTCAATCTGGAAATTAACCACATCTTGGGCAGCCATGAGAATCGAATCCTGGATATAGATGCTCTGTGTATGGAGAACAGATATCTTCATGAGCGGCTTATGCAGCTTCAGGAGGAGGTCAGTCTCCTCAAATCAAACGTGATGAAGTACAAGaGTGCTTTGGAAAGCAAAAAGAACTGCAAAGTCTACGGCAAGTCTAATAGCAGTGCTTTAACAGGTGTCCTTTCTGCTAAACAAGTTCAAGAGCTGCTGCTTTCTGAGGAGAATGGCTGCAGTCTCCCAGTCACTTCACAGTCCATTAGTGACCTGAAGTCTCTGGCCACGGCTCTGCTGGAGACCATTCATGAGAAGAACATGGTCATTCAGCATCAGCGGCAAACCAACAAGATCCTGGGTAATCGAGTGGCAGAACTGGAAAGGAAGTTGAAAACATTAGAGGTTTCTGGGTTGTGGAGTCTGCCAGGCATCACCTACAATGTGTCTCTTGGACTTGGGAGAAGGAAAGCTGTTATTGTCTTGAGCGACTCTCAGCATGTCCAGTCCACCACGGAGCAGTCAGTCCATCTGACACCAGAGGCAATGGTAGCAGATGAGGAGATTGTTACCGGAGAAGAGGTCACAGAAGATACCGGACTCAGCGCGGACTTCAGCCAAGATGAATGTCAAGCCGGGGCAGTGGAGCTAAACCAAAACTCTGACTATTTTACCCACACATATTCAGTCTCAGCAACTCCACAAGTCAGTACTCCTGCAGAAAACATCCAGCCGGTGGAGAGCATGCAGAGTAAAACGCTTGCTCTCTGTGACTCTGAGAGATCTGCGTGTACTGCTGAGAGATCAGAACAACACGATGAAGATCTCCAAAGTGGGGGACATCAGTCAATGAGCACAGAAGCGTCTTTGAAAGCTTTAGAAGAACAGGCTGTGGAGAATGATAATTTCTCCGGGGACTGTGAAAGTCAAGGTGCATTAGAGGACAGTCAGCCTGTGACATCAGAGACCTCTGGCAGCTTTGACTGTATTTCAGGATCTGAGTCTTGCACAGCAGAACAGCAAACGGAGCGGTCGATTGAAGAAGAAACAGAGCATGCTTCCCTAAACACAAGTCCACCTGAACAAACTTCACCACACCAGGAATGTCCTTCTTCATGATGTTAAAAACTCGCAAGAGCATTCACGAAAGCACCTCCATTTATTTCTAGTCCACCACTTAAATTAAGTGTCTGATTCAGAATGAAAAAAGTTtgaatgtataaattaaatgtcTTCATCTTTCCAGTTAAGATGAAAGCAAGGTATAGGTTGACCTAAATGCAAGATGGTAAAACCAGCAAGCTGATTAATCAAACCTGGAATATCTAATATAAGCATTTTCAATTATTTGAGATCATTCTGTGTTTGAATCCCACAATCACGACACTACCAGcgaatttgttttctttattttccataACATTATTGTGAAAGCATACGTAATCATTTCATCTTTATGTATTTTGATTATTTAAGCATCTTTGCCATTGCTTTTGATGGATTTTGAGGGTAAGATGTGACTTTTTTTCCTCTTAAACCACAACATTCATGTTCATAtgcataatgtatttatttactctttCGTTTATTCagctacatatttttttattcattatggagttgagtatttttatttaatttcatatatgtcttatttattatttgtgatCTTGATGATTGTAATAGTGCTTGATCTGTGATGGTGTAAAAATCATTGTCTGTAGATCACCTGATATTATTACACTGTAATGTGGtgtaaaattaaaacaatcaTCAGTTTGAA

Function

symbol description
ccdc149b Orthologous to human CCDC149 (coiled-coil domain containing 149).

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005575 cellular_component cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040718-465 Orthologous to human CCDC149 (coiled-coil domain containing 149).

Ensembl:

ensembl_id ENSDARG00000020857

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00000808 True 2502 mRNA 0.43 13 40034061 40053012

Neighbor

gene id symbol gene type direction distance location
XLOC_000462 lgi2b coding upstream 5202 40023640 ~ 40028859 (+)
XLOC_000461 aip coding upstream 24247 39995008 ~ 40009814 (+)
XLOC_000460 sod3b coding upstream 42019 39990547 ~ 39992042 (+)
XLOC_000459 NA coding upstream 132393 39896388 ~ 39901668 (+)
XLOC_000457 irf2a coding upstream 153872 39859782 ~ 39880189 (+)
XLOC_000464 si:ch211-113e8.11 coding downstream 54799 40107811 ~ 40115242 (+)
XLOC_000465 zgc:152658 coding downstream 87486 40140498 ~ 40146782 (+)
XLOC_000466 zgc:194443 coding downstream 95181 40148193 ~ 40150415 (+)
XLOC_000467 si:ch211-113e8.9 coding downstream 103895 40156907 ~ 40177693 (+)
XLOC_000468 si:ch211-113e8.5 coding downstream 146062 40199074 ~ 40201140 (+)
XLOC_000458 NA non-coding upstream 158564 39874126 ~ 39875497 (+)
XLOC_000456 CU929244.1 non-coding upstream 196278 39837656 ~ 39837783 (+)
XLOC_000455 BX324208.1 non-coding upstream 424111 39609833 ~ 39609950 (+)
XLOC_000454 BX322797.1 non-coding upstream 520204 39513741 ~ 39513857 (+)
XLOC_000473 NA non-coding downstream 280946 40333958 ~ 40337712 (+)
XLOC_000474 NA non-coding downstream 466329 40519341 ~ 40520445 (+)
XLOC_000477 NA non-coding downstream 594755 40647767 ~ 40649386 (+)
XLOC_000478 FO834828.1 non-coding downstream 610524 40663536 ~ 40671733 (+)
XLOC_000479 FO834828.2 non-coding downstream 630479 40683491 ~ 40692718 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000049_06738507_06752689 CCDC149B, CCDC149 coding CI01000049 null 6738125 ~ 6752817 (+)