RNA id: TCONS_00003101


Basic Information

Item Value
RNA id TCONS_00003101
length 3497
lncRNA type antisense_over
GC content 0.43
exon number 2
gene id XLOC_000473
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 40333958 ~ 40337712 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTGGCATTACCATTTACATAATTCTgtacatgaaaaagaaaaaagcactGCTTTAGATACAGAGTAAAACCTGAAAACTAGAAAAaaccttcaaaataaaaattagagGAGGTTTACATTACAAATTAGTAGTAAGACATTGTCTGAAGTGCAATGGTATAGCTCAGATGAGtttaaaagtggaaaaaaagatgaaataaaaATACTTCTCTATCTTCAACAAAAACAGCAATATCTTTACAGTGAGTAGAGACGTATCCTCTGATGTATTTAAAATCGTAAAAACATATTTACAGATAACTGTATCTGATATATATCTTTTTCCATCACATATATGTCAGCAccagtacaaaataaaaaagaagctgGATGACTTCAACAGAAATCAAGAAAAACATGGTAATCTTGGTCCCAGATTGTTGATATTTGGTGAGACGGTGGGAAAAAGCGGGCTTTACCCTGTCCCATCTGCAATCTTCTTGACAGAGCGACAAACTAACACTGCGAAACACTGAATGCATCCAATCTCCCGTTAAGACAaacaaattctcaaaaaaaaggGCAAAGTCAGTCACAAGGTTACATTCATGTTCATTCTTCAGAGAGCTGAAACAATAAAACTAGAGGTTGATCACAAAGACATCATGACTAGAATACCGTAATACAACACACAAAACAGGCGGAGCCATCCAAATTCCTATTTTTGTGTGGCATTTCATGGGAACAACAGTCTAAACTAAGGTCTGGCTGAGATAAACAACTACTGTTTTGAGACTTGATTTTGAAATTAGTTAAAGTCACAACAAGGAACACAAGTTGGTGGGAATGGATCGAAAATACCCGATAAAAAGTAGAAGCTTACACTGATTAAGATGCTTTTGGTGAATTTCTTGTCACAGTTGAAAGGGCAAGTTGTCTGGATGTGCTTGTTTTCCTCGGTCAGGCATTGAGTAAAGGAGTGTCAGTGTGTTTAAGAGTTTGAAGAGCTGCAGTGATGTACAGgaactaataaatatatatcagTTTGAAGAGGAAAAGAAAAGTGCTGTGAGCCATCTATGGAAATACAgtgtgtacactctcagaaataaagagatagatcacccaaaaatctactcaccctcaagttgttccaaaccttttgaGTTTCTTGCTTTTGTTGAACAacagatactttgaagaaagctaaaaacctgtaaccattgacttctatggttacaggtttgtaacatttaaaaaaaaatcttcttcaaAATATATCAGAAGCAATAAACTTGAAGTCAAATTAGGATTTGAGACTTAATTACAGCTtaatggatgagtaaatgattattttctttgggtgaactatcaccaatttttgatgattaaaatgtttttaaccaGAGCTCACGAGCAAAGAAAGGAAACAAAACATACAACGCATATTTGATGTCGTGATTAGAGGGCTTATTTTGTCTTTGCAAATGTCTGAGGGGCATCACCGACTGATTCTTTATACTTGGGTGAGCTGTTTGTTATGATCCAGATGAGATCATGTCATGGTATCCTCTCTAGCTGCCATTGTGACTAAAGAAAACCTCTTTCTCACAGTTGTAGGGAGTTGGGGGAGAAGTTTGTAGCTGCCAAATCTCTTCAAGCAATATGAACAAACACCTagttgacaaacacacacatggctTCACTCTTTTACTGACACCGGTCGCCTAGCGACAGCAGAGCATCCATCTTGCATGCGCTGAGAGAGCACACAGAGTCTGACGTGTTGTGCTGCGACGCTCGtagtgcaaacaaacacacaagcgcAAAGCAGAGCAAACGCAGAGGATCAACACACCTCAAGAGCAGCAAGAGATATAGAGAGAAGATTAGCAAGAGAAGGAGAGCAGTGTGTTCGACAGTTTGCTTTCGGGAAAATGGATCCACTGGTGACAAAGGCCCACCTCAAATCTTCACACAATCTTTAATACATGAACAGGATGTCAGAATAAGGGTcaactaaatacataaaaacattgcATCCAAAATCTTTCCCAATGTCATTTTGCAGGTTTTCAGTGCCTCTTGCCCTTAGTCCAGCATAAAGGacatgagaaaaaaaagagagacagaaaTGGATCAAATCCAAAgggtattaaaaaaaacaaaactttaaatgCAGAACACCGGATCTATACTCGAGAGTCAACCCAAACAGAGAGGAATTGGTTTAAATATTGTGACAGCACACACATGTAATACACAACATGTAATATATATCTTAGATTTGTCGaccatgtaataaaaaataaaacaataaaaccaaTCACATTTTCATAAAACTGtcctgttaaaaaacaaaaacccttAGGCTATTGGTTGGGGAAAAACTCTTCCATCCAACCTTCCGTTGAATCCAAATCTGTCCCATCCGACAGGCCGAACGAAACCCCAGCCCCAGCCCCTGATTGGCTGCCGTAACCGTATGCCAGTTCCTGATTGGACGTCCTCTGGTAGCCCTGAGGCTGACCGCCTGGCATGTACGGCCCACCCCCTCCCGATGCCCCTGGCATGCCCTGAGCAGGGCCTTGTCCGAAAGCGGCCATGTTGGGCACTCCCTGGTTCATGCCAGGCATCACCATACCCCGCGGCTGGTTTGTCCTTGGTTGGCCTGCCATGTGCGGCATCATCGGCCCACCCATCGCTGCAGGGTTAATCGAGCGTGGGTCCACCATAGTCTGTCCGCCCATCGCCTGTGCGAAATGCTGCTTGGCCATCCGAGGAGGCTGACCACCTTGCATGGCGTACGCAGGGTTACTGTTAAACGCCACCATGTCGTTTGAAGTCCTTCCGGCCATGGCCTGCATGTTTTGCTGCTGCTGCGGCCACGCTTGTCCTCCGCCTCCCATCATACTCTGCAGTCTCTGAACTTGCGCTTTGGCCATCGGTTGCCCACCAGGGGCGACACCGGCTGATTTTAGTTGCTGCTGTGAGAGGTTGGGGTTCATGAGCATCGCCTGCCCATACCCGGCTCCTGCACCTCCCCCGACCATCCCCTGTCCACCGGCACCCGCTTGCCTCTGTGCCATCGCCATGCTTGCCTGGTTGGGATGGTGCTGCTGTTGCTGCTGGAGCATCTGACCCATGTTTGGGTTCATCCCCTGATACATGCCTGTCTGTGCGCCAGCCTGGCCTCCGTACGCCATGCTCATGTCACCCTGCGTAGGCATGGCGGCGGCGTTCTGGACGGGCGTCATCTGCATCATCCCCGggttctgctgctgctgttgctgcatGAGTCGAGCGGTACGCATGTTCTGCAGCGTCTGGTTCCTGGCTGCCATCTCCTGGGACGTGCCTAAAATAATGAacaattaaataatgttaactgACATCTGTTGTTCTTATTACATTTCCAGTACATCAAAGGCTTGTTTCAATTAAATTCTAATGGCATAAATAGGCGCTCTCGAAAGCTTAGCAAATCACTGTAAATTGTCTATGATGGCATAAACTGC

Function

GO:

id name namespace
GO:0043227 membrane-bounded organelle cellular_component

KEGG:

id description
ko00904 Diterpenoid biosynthesis
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00000826 lncRNA upstream 11400 40321912 ~ 40322558 (+) True XLOC_000472
TCONS_00000806 lncRNA upstream 331755 39995067 ~ 40002203 (+) True XLOC_000461
TCONS_00002860 lncRNA upstream 432290 39896388 ~ 39901668 (+) True XLOC_000459
TCONS_00003100 lncRNA upstream 458461 39874126 ~ 39875497 (+) True XLOC_000458
TCONS_00003099 lncRNA upstream 1133249 39173248 ~ 39200709 (+) True XLOC_000452
TCONS_00003102 lncRNA downstream 181629 40519341 ~ 40520445 (+) True XLOC_000474
TCONS_00003103 lncRNA downstream 310055 40647767 ~ 40649386 (+) True XLOC_000477
TCONS_00000834 lncRNA downstream 325824 40663536 ~ 40671733 (+) False XLOC_000478
TCONS_00002861 lncRNA downstream 330555 40668267 ~ 40669545 (+) False XLOC_000478
TCONS_00002862 lncRNA downstream 330555 40668267 ~ 40670476 (+) True XLOC_000478
TCONS_00000824 mRNA upstream 4317 40308077 ~ 40329641 (+) False XLOC_000472
TCONS_00000823 mRNA upstream 26152 40291054 ~ 40307806 (+) True XLOC_000471
TCONS_00000821 mRNA upstream 63397 40263671 ~ 40270561 (+) False XLOC_000470
TCONS_00000819 mRNA upstream 75528 40237276 ~ 40258430 (+) False XLOC_000469
TCONS_00000818 mRNA upstream 132818 40199083 ~ 40201140 (+) True XLOC_000468
TCONS_00000827 mRNA downstream 224828 40562540 ~ 40569613 (+) False XLOC_000475
TCONS_00000828 mRNA downstream 229266 40566978 ~ 40568827 (+) False XLOC_000475
TCONS_00000829 mRNA downstream 229286 40566998 ~ 40568750 (+) True XLOC_000475
TCONS_00000831 mRNA downstream 275585 40613297 ~ 40638809 (+) False XLOC_000476
TCONS_00000832 mRNA downstream 275585 40613297 ~ 40641467 (+) False XLOC_000476
TCONS_00000825 other upstream 17788 40308238 ~ 40316170 (+) False XLOC_000472
TCONS_00000822 other upstream 63397 40269633 ~ 40270561 (+) True XLOC_000470
TCONS_00000820 other upstream 76132 40248327 ~ 40257826 (+) True XLOC_000469
TCONS_00000815 other upstream 171307 40156910 ~ 40162651 (+) False XLOC_000467
TCONS_00000813 other upstream 174681 40156907 ~ 40159277 (+) False XLOC_000467
TCONS_00000830 other downstream 275580 40613292 ~ 40627010 (+) False XLOC_000476
TCONS_00000851 other downstream 787574 41125286 ~ 41125402 (+) True XLOC_000487
TCONS_00000853 other downstream 932061 41269773 ~ 41269887 (+) True XLOC_000489
TCONS_00000875 other downstream 1511529 41849241 ~ 41859732 (+) False XLOC_000501
TCONS_00000877 other downstream 1511594 41849306 ~ 41858890 (+) False XLOC_000501

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) TU50043 True 329 lncRNA 0.34 2 NC_048565.1 41737627 ~ 41794741 (+)
striped catfish (Pangasianodon hypophthalmus) TU50043 True 2448 lncRNA 0.36 1 NC_047597.1 7436442 ~ 7438889 (-)