RNA id: TCONS_00003099


Basic Information

Item Value
RNA id TCONS_00003099
length 668
lncRNA type inter_gene
GC content 0.39
exon number 3
gene id XLOC_000452
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 39060437 ~ 39200709 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTGGCGCTCGTGTGTTCTGTGCTACATGGCCCTCGGTATACAGAACCCCACTGTTGCTGAATAATCAGAACCCTCTGTCCTCGATCCTTCCACTGATCGTGTGAGGTCAAACCTGATGTGCCAAATCCAAGTTCTATTTGACAAATCcaccaaatgaatgaaaaagagcTCCCCACAAAACCGTCCTCCGATTCAGGAAAGATCCCTGGCTCCATCTCCTAGGAAACAAGGAAGGATCTTGTAATTTACCAAATTACTCAAgccactttctccagaagatcaAGACAATGTCATTCTCCATCTTTCATGTCCTTGGGAACATAATTCATTCTTTTTCACTGCATAgactggggaaaaaaagaagagcaAGAGACTTTTGCCATATTGCTCCATAGTCAGAGCAACCTTTTGAAAATTGACATTTTGTAAAATACTTCTCTGCAAAGATCGAAGTCCAAGCTATAATTCTGTGAGTCCTCGTGTTCATACAATTTCTAAAAGGAGGTTTTAGAAAGAAAGGTTGCTGTCAAACTCAACCTCAGTTTTTCTTTGGTTTTAGAAGAAGACCTGTTAAATTGTGAGTTTAGTATCTTTTTGTACTTGCTATTTGTTAAAATCTTGATCTTAAGGTTGAGGGTATTGTATATGTTATCGttttatgtgtgcat

Function

GO:

id name namespace
GO:0005212 structural constituent of eye lens molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003097 lncRNA upstream 109245 39060437 ~ 39064003 (+) False XLOC_000452
TCONS_00002858 lncRNA upstream 139657 39033140 ~ 39033591 (+) True XLOC_000451
TCONS_00000790 lncRNA upstream 150416 38928636 ~ 39022832 (+) False XLOC_000449
TCONS_00003096 lncRNA upstream 151388 38928816 ~ 39021860 (+) True XLOC_000449
TCONS_00000789 lncRNA upstream 151548 38928636 ~ 39021700 (+) False XLOC_000449
TCONS_00003100 lncRNA downstream 673417 39874126 ~ 39875497 (+) True XLOC_000458
TCONS_00002860 lncRNA downstream 695679 39896388 ~ 39901668 (+) True XLOC_000459
TCONS_00000806 lncRNA downstream 794358 39995067 ~ 40002203 (+) True XLOC_000461
TCONS_00000826 lncRNA downstream 1121203 40321912 ~ 40322558 (+) True XLOC_000472
TCONS_00003101 lncRNA downstream 1133249 40333958 ~ 40337712 (+) True XLOC_000473
TCONS_00000787 mRNA upstream 313823 38858399 ~ 38859425 (+) True XLOC_000450
TCONS_00000784 mRNA upstream 351081 38818268 ~ 38822167 (+) False XLOC_000448
TCONS_00000783 mRNA upstream 369753 38776294 ~ 38803495 (+) True XLOC_000447
TCONS_00000781 mRNA upstream 370600 38758445 ~ 38802648 (+) False XLOC_000447
TCONS_00000791 mRNA downstream 187167 39387876 ~ 39491773 (+) False XLOC_000453
TCONS_00000792 mRNA downstream 187167 39387876 ~ 39776719 (+) False XLOC_000453
TCONS_00000793 mRNA downstream 281879 39482588 ~ 39493825 (+) False XLOC_000453
TCONS_00000795 mRNA downstream 352331 39553040 ~ 39779913 (+) False XLOC_000453
TCONS_00000796 mRNA downstream 397100 39597809 ~ 39777447 (+) False XLOC_000453
TCONS_00000785 other upstream 351085 38818312 ~ 38822163 (+) False XLOC_000448
TCONS_00000786 other upstream 351085 38819577 ~ 38822163 (+) True XLOC_000448
TCONS_00000779 other upstream 420219 38665754 ~ 38753029 (+) True XLOC_000446
TCONS_00000777 other upstream 798449 38362348 ~ 38374799 (+) False XLOC_000445
TCONS_00000769 other upstream 1176671 37996459 ~ 37996577 (+) True XLOC_000440
TCONS_00000794 other downstream 313032 39513741 ~ 39513857 (+) True XLOC_000454
TCONS_00000797 other downstream 409124 39609833 ~ 39609950 (+) True XLOC_000455
TCONS_00000798 other downstream 493685 39694394 ~ 39697491 (+) False XLOC_000453
TCONS_00000799 other downstream 499850 39700559 ~ 39713394 (+) True XLOC_000453
TCONS_00000800 other downstream 636947 39837656 ~ 39837783 (+) True XLOC_000456

Expression Profile

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