RNA id: TCONS_00002858


Basic Information

Item Value
RNA id TCONS_00002858
length 452
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id XLOC_000451
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 39033140 ~ 39033591 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gaacaaaaaataactgtgtgcaagcattgttttacacgtataaccatgactgcacatctgcagtgcCATCACatagcaatatcactgtctgaaggcagaatAGCTGAGAAGGTAAtatccaaatagcaacaatccctcgctgaatctttcaagcaaacataccctACTGGTTCcaagagacacataaaaataacaaaggcagtgcgggtgtttattgctaaagatttgcagccgttttcggtgattggagatgcgggcttttgtcattttataaaagcactagATCCGCGTTACATACTACAGTCTCACATTTTTTCAGCAACGAGATAAtcaagatggtttatttatgtttactaaaGTACAAATaggtttatttgaaatggccaatttatctttattaagttcacatgtatgtttattttcaaagtctAGGATtgtatgtgttccccagt

Function

GO:

id name namespace
GO:0072068 late distal convoluted tubule development biological_process
GO:0046034 ATP metabolic process biological_process
GO:0009123 nucleoside monophosphate metabolic process biological_process
GO:0009126 purine nucleoside monophosphate metabolic process biological_process
GO:0009141 nucleoside triphosphate metabolic process biological_process
GO:0009144 purine nucleoside triphosphate metabolic process biological_process
GO:0009161 ribonucleoside monophosphate metabolic process biological_process
GO:0009167 purine ribonucleoside monophosphate metabolic process biological_process
GO:0009199 ribonucleoside triphosphate metabolic process biological_process
GO:0072025 distal convoluted tubule development biological_process
GO:0009205 purine ribonucleoside triphosphate metabolic process biological_process
GO:0005753 mitochondrial proton-transporting ATP synthase complex cellular_component
GO:0044422 obsolete organelle part cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:0044427 obsolete chromosomal part cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0044455 obsolete mitochondrial membrane part cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0045259 proton-transporting ATP synthase complex cellular_component
GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o) cellular_component
GO:0005694 chromosome cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) cellular_component
GO:0005739 mitochondrion cellular_component
GO:0098800 inner mitochondrial membrane protein complex cellular_component
GO:0015002 heme-copper terminal oxidase activity molecular_function
GO:0015078 proton transmembrane transporter activity molecular_function
GO:0004129 cytochrome-c oxidase activity molecular_function
GO:0016675 oxidoreductase activity, acting on a heme group of donors molecular_function
GO:0016676 oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko05169 Epstein-Barr virus infection
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00000790 lncRNA upstream 10308 38928636 ~ 39022832 (+) False XLOC_000449
TCONS_00003095 lncRNA upstream 11280 38849629 ~ 39021860 (+) False XLOC_000449
TCONS_00003096 lncRNA upstream 11280 38928816 ~ 39021860 (+) True XLOC_000449
TCONS_00000789 lncRNA upstream 11440 38928636 ~ 39021700 (+) False XLOC_000449
TCONS_00000788 lncRNA upstream 37379 38928636 ~ 38995761 (+) False XLOC_000449
TCONS_00003097 lncRNA downstream 26846 39060437 ~ 39064003 (+) False XLOC_000452
TCONS_00003098 lncRNA downstream 26846 39060437 ~ 39200709 (+) False XLOC_000452
TCONS_00002859 lncRNA downstream 138970 39172561 ~ 39173472 (+) False XLOC_000452
TCONS_00003099 lncRNA downstream 139657 39173248 ~ 39200709 (+) True XLOC_000452
TCONS_00003100 lncRNA downstream 840535 39874126 ~ 39875497 (+) True XLOC_000458
TCONS_00000787 mRNA upstream 173715 38858399 ~ 38859425 (+) True XLOC_000450
TCONS_00000784 mRNA upstream 210973 38818268 ~ 38822167 (+) False XLOC_000448
TCONS_00000783 mRNA upstream 229645 38776294 ~ 38803495 (+) True XLOC_000447
TCONS_00000781 mRNA upstream 230492 38758445 ~ 38802648 (+) False XLOC_000447
TCONS_00000791 mRNA downstream 354285 39387876 ~ 39491773 (+) False XLOC_000453
TCONS_00000792 mRNA downstream 354285 39387876 ~ 39776719 (+) False XLOC_000453
TCONS_00000793 mRNA downstream 448997 39482588 ~ 39493825 (+) False XLOC_000453
TCONS_00000795 mRNA downstream 519449 39553040 ~ 39779913 (+) False XLOC_000453
TCONS_00000796 mRNA downstream 564218 39597809 ~ 39777447 (+) False XLOC_000453
TCONS_00000785 other upstream 210977 38818312 ~ 38822163 (+) False XLOC_000448
TCONS_00000786 other upstream 210977 38819577 ~ 38822163 (+) True XLOC_000448
TCONS_00000779 other upstream 280111 38665754 ~ 38753029 (+) True XLOC_000446
TCONS_00000777 other upstream 658341 38362348 ~ 38374799 (+) False XLOC_000445
TCONS_00000769 other upstream 1036563 37996459 ~ 37996577 (+) True XLOC_000440
TCONS_00000794 other downstream 480150 39513741 ~ 39513857 (+) True XLOC_000454
TCONS_00000797 other downstream 576242 39609833 ~ 39609950 (+) True XLOC_000455
TCONS_00000798 other downstream 660803 39694394 ~ 39697491 (+) False XLOC_000453
TCONS_00000799 other downstream 666968 39700559 ~ 39713394 (+) True XLOC_000453
TCONS_00000800 other downstream 804065 39837656 ~ 39837783 (+) True XLOC_000456

Expression Profile

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