RNA id: TCONS_00000826


Basic Information

Item Value
RNA id TCONS_00000826
length 381
lncRNA type retained_intron
GC content 0.40
exon number 3
gene id XLOC_000472
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 40308077 ~ 40329641 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAACAATTAGCCTATTGGAAATACATTATTTTAGTGTTTACAACATATCCAGGTTACTGTATTTTTGTAGTTATTATTTCAATTATGATGATCTGCAGTGATGTGTCTATCATACAGATTTTGGGCCTTTGACAAGAACCGACAATGCAGATATTTTCAAAAAGAGACTCACCTCCCTTACAGCAGAGGGTGGAGgagatttcccagagatgtgcCTGTCAGGACTGCTGTTGGCTTTAGCAGGAGCTCCTCCATCATCAGACATTTTTGTTTTCACTGATGCTACAGCAAAAGACTCAGAATTAGGAAGCATCGTTCAGGCCATGATTGAACGCACCAAGTCAACAGTCACTTTCATGTTGACCGGTTCCTTCTCTTACC

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-090313-295 Orthologous to human VWA7 (von Willebrand factor A domain containing 7).

Ensembl:

ensembl_id ENSDART00000139878

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00000806 lncRNA upstream 319709 39995067 ~ 40002203 (+) True XLOC_000461
TCONS_00002860 lncRNA upstream 420244 39896388 ~ 39901668 (+) True XLOC_000459
TCONS_00003100 lncRNA upstream 446415 39874126 ~ 39875497 (+) True XLOC_000458
TCONS_00003098 lncRNA upstream 1121203 39060437 ~ 39200709 (+) False XLOC_000452
TCONS_00003101 lncRNA downstream 11400 40333958 ~ 40337712 (+) True XLOC_000473
TCONS_00003102 lncRNA downstream 196783 40519341 ~ 40520445 (+) True XLOC_000474
TCONS_00003103 lncRNA downstream 325209 40647767 ~ 40649386 (+) True XLOC_000477
TCONS_00000834 lncRNA downstream 340978 40663536 ~ 40671733 (+) False XLOC_000478
TCONS_00002861 lncRNA downstream 345709 40668267 ~ 40669545 (+) False XLOC_000478
TCONS_00000823 mRNA upstream 14106 40291054 ~ 40307806 (+) True XLOC_000471
TCONS_00000821 mRNA upstream 51351 40263671 ~ 40270561 (+) False XLOC_000470
TCONS_00000819 mRNA upstream 63482 40237276 ~ 40258430 (+) False XLOC_000469
TCONS_00000818 mRNA upstream 120772 40199083 ~ 40201140 (+) True XLOC_000468
TCONS_00000817 mRNA upstream 120784 40199074 ~ 40201128 (+) False XLOC_000468
TCONS_00000827 mRNA downstream 239982 40562540 ~ 40569613 (+) False XLOC_000475
TCONS_00000828 mRNA downstream 244420 40566978 ~ 40568827 (+) False XLOC_000475
TCONS_00000829 mRNA downstream 244440 40566998 ~ 40568750 (+) True XLOC_000475
TCONS_00000831 mRNA downstream 290739 40613297 ~ 40638809 (+) False XLOC_000476
TCONS_00000832 mRNA downstream 290739 40613297 ~ 40641467 (+) False XLOC_000476
TCONS_00000825 other upstream 5742 40308238 ~ 40316170 (+) False XLOC_000472
TCONS_00000822 other upstream 51351 40269633 ~ 40270561 (+) True XLOC_000470
TCONS_00000820 other upstream 64086 40248327 ~ 40257826 (+) True XLOC_000469
TCONS_00000815 other upstream 159261 40156910 ~ 40162651 (+) False XLOC_000467
TCONS_00000813 other upstream 162635 40156907 ~ 40159277 (+) False XLOC_000467
TCONS_00000830 other downstream 290734 40613292 ~ 40627010 (+) False XLOC_000476
TCONS_00000851 other downstream 802728 41125286 ~ 41125402 (+) True XLOC_000487
TCONS_00000853 other downstream 947215 41269773 ~ 41269887 (+) True XLOC_000489
TCONS_00000875 other downstream 1526683 41849241 ~ 41859732 (+) False XLOC_000501
TCONS_00000877 other downstream 1526748 41849306 ~ 41858890 (+) False XLOC_000501

Expression Profile

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