RNA id: TCONS_00000820


Basic Information

Item Value
RNA id TCONS_00000820
length 587
RNA type nonsense_mediated_decay
GC content 0.51
exon number 3
gene id XLOC_000469
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 40237276 ~ 40258430 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTGGTCAAACGTTTAGAGGCAGATCTTGGGGTCAAAGTTCAAGAGCTGTTGATCCCCCAGCTGAAATACTCTTTTCAGATCTGGGGAACCATGATGGCTTCGCCTGGCAAGGATGGAAAGGTCTGGCTTTAGTTGAGCTTTTCCAGAGCTCCCACCCATCTCCGTTCATTATGCAGCAGAAGGAGAGTCTGCAGCAGGAGCTGGAGGAGCTACTGGGCACAGATGGAGTGCTGCTGTACCCCAGCCATCCCCTGATCGCCCAGAAACACCACCACCCCATTTTCACACCCTTCAACTTCTCTTACACTGGGATCTTCAATATTCTGGGCCTGCCAGTAACCCAGTGTCCACTAGGGCTGAGTGCGGAGGGTTTGCCCCTGGGTGTACAGATCGTGGCAGGTAAATTACAGGACCGTCTCTCATTGGCTACTGCCCTCTACCTGGAGAAGGCTTTTGGTGGCTGGAGGGAACCAGGAAAGACAACAATAAAGCCTTAAGTCACTTCACACATCTGCAACAACAGGACCATATAACCAAcatcacacatactgtacatacacagtACATATTCAGTATGTGGAACCATC

Function

GO:

id name namespace
GO:0006629 lipid metabolic process biological_process
GO:0016042 lipid catabolic process biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0103073 anandamide amidohydrolase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0102077 oleamide hydrolase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040718-453 Predicted to enable anandamide amidohydrolase activity and oleamide hydrolase activity. Predicted to act upstream of or within lipid catabolic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in intestinal bulb and liver. Orthologous to human FAAH2 (fatty acid amide hydrolase 2).

Ensembl:

ensembl_id ENSDART00000149595

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00000806 lncRNA upstream 246124 39995067 ~ 40002203 (+) True XLOC_000461
TCONS_00002860 lncRNA upstream 346659 39896388 ~ 39901668 (+) True XLOC_000459
TCONS_00003100 lncRNA upstream 372830 39874126 ~ 39875497 (+) True XLOC_000458
TCONS_00003099 lncRNA upstream 1047618 39173248 ~ 39200709 (+) True XLOC_000452
TCONS_00002859 lncRNA upstream 1074855 39172561 ~ 39173472 (+) False XLOC_000452
TCONS_00000826 lncRNA downstream 64086 40321912 ~ 40322558 (+) True XLOC_000472
TCONS_00003101 lncRNA downstream 76132 40333958 ~ 40337712 (+) True XLOC_000473
TCONS_00003102 lncRNA downstream 261515 40519341 ~ 40520445 (+) True XLOC_000474
TCONS_00003103 lncRNA downstream 389941 40647767 ~ 40649386 (+) True XLOC_000477
TCONS_00000834 lncRNA downstream 405710 40663536 ~ 40671733 (+) False XLOC_000478
TCONS_00000818 mRNA upstream 47187 40199083 ~ 40201140 (+) True XLOC_000468
TCONS_00000817 mRNA upstream 47199 40199074 ~ 40201128 (+) False XLOC_000468
TCONS_00000814 mRNA upstream 70634 40156908 ~ 40177693 (+) False XLOC_000467
TCONS_00000816 mRNA upstream 84336 40158146 ~ 40163991 (+) True XLOC_000467
TCONS_00000812 mRNA upstream 97912 40148745 ~ 40150415 (+) True XLOC_000466
TCONS_00000821 mRNA downstream 5845 40263671 ~ 40270561 (+) False XLOC_000470
TCONS_00000823 mRNA downstream 33228 40291054 ~ 40307806 (+) True XLOC_000471
TCONS_00000824 mRNA downstream 50251 40308077 ~ 40329641 (+) False XLOC_000472
TCONS_00000827 mRNA downstream 304714 40562540 ~ 40569613 (+) False XLOC_000475
TCONS_00000828 mRNA downstream 309152 40566978 ~ 40568827 (+) False XLOC_000475
TCONS_00000815 other upstream 85676 40156910 ~ 40162651 (+) False XLOC_000467
TCONS_00000813 other upstream 89050 40156907 ~ 40159277 (+) False XLOC_000467
TCONS_00000800 other upstream 410544 39837656 ~ 39837783 (+) True XLOC_000456
TCONS_00000799 other upstream 534933 39700559 ~ 39713394 (+) True XLOC_000453
TCONS_00000798 other upstream 550836 39694394 ~ 39697491 (+) False XLOC_000453
TCONS_00000822 other downstream 11807 40269633 ~ 40270561 (+) True XLOC_000470
TCONS_00000825 other downstream 50412 40308238 ~ 40316170 (+) False XLOC_000472
TCONS_00000830 other downstream 355466 40613292 ~ 40627010 (+) False XLOC_000476
TCONS_00000851 other downstream 867460 41125286 ~ 41125402 (+) True XLOC_000487
TCONS_00000853 other downstream 1011947 41269773 ~ 41269887 (+) True XLOC_000489

Expression Profile

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