commd1 (commd1,LOC102781613,LOC103150757)


Basic Information

Item Value
gene id commd1
gene name commd1,LOC102781613,LOC103150757
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 7225340 ~ 7240150 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU3357
CGGACGTGGAAGCAACTAAGTCTTTGAGCGGACTGTTAAGCGGAATAGCTCAGCAAGTGTATTATAACAACAGCGAAATCACGGAGGAGCTGCTGAACAGTGAGTTATACCCCGAGCTGTCGCAGGAGCAGTTCAAGGCCCTGCATGAGAAAATGAAAGGCCTCCTAAAGTCCATCGCCACAGCAGACATGGACCCCGCCCAGCTGGAGGCCTTCCTCACAGCGCAGACCAAGAGGCAGGGCAGCGGCGGGGTGACCGCCGAGCAGGCCGCCGCCCTCTCTCGCTTCTGGAAGAGCCAGCGAGTCCGAGTGAGGGAGAGCTTGCTGGCTCAGAGCCGCTGGGAGCCCGGCCTCAGGGGCCTCTCCTGGAGGGTGGACCTCCAGACCGCGGCCAGCCGGGGGGACGCAGCCCACAGCGGCCCCGTGGCCCTGATGGAGCTGGAGCTGGGCAGAGCCGGACAGgaCTCTGAGTTTGTGTGTCTGGAGTTCGATGAAACCAAAGTGAACCAGGTGCTGAAGAAGATGGCTGATATCCAGGAGAGCATTGACAGAATCGTTCACCGCACATAgagaccctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagtgagagtttTTCTCTCAGACAGCGAAGCAGCGCGGTGTGATTCTGACACCGAGAGAGACGAGGTCTGACCGACTCCAGCTGTTTTCTCGTGGCAGACCCGTGTTTGCCAGAGTGGCTCCATCGTGGCTTCGGCACATGCATACAGAGTCAGAACGGACAAACTGTAAGATATATATGATCATCACACACATGATTCACATGTGATTTTGAAGGGCCTCACTTGTTCATGGACCAAAAGttctgtttatttctttttaacctCCCATTAACTCAAAGGGCTGGACTGTTTTAGGTTCCTCTCTGACCATAGCGGCAAAAAACTAAATGCAGCACATCGGGCCGATcttccggcagcaccggagcaattccCTAAAATAAATCCTCATCGATATATAGACTACTTAGGCATCagtgcatgggaaaatagggtcaaAGTTGGagataaaaaaaggaaattacccTTTAATACTTTGCACAACTCATGCAAGTTAAGCATTCAAAGCTCAGCTGACAAAGTCTTGGTCAAAGGTTGGACTGATAAAGCCTGGCCTGTTGAAGACACTTCAGAGCTGTCCTGTTCCTTTAAACCACGCGTGTCACTTTAGGTTcccaatacattttggcccgcctagatttcgtcactttttcaaagttttgtcgcctttttctgaagtttttgtgactttttctgacttttttttccagcggttatttcaaagttttttggtgctttttacaactttttagGGGTTCCTCTTTcgacgtttttattttattttttccgaTGCTTTTGTGACCTTTTTTTGgcgttttttcattttttctatgAAGGCTAAGGATTtgtttttgggggcattttcggcctttattttgacaagaaagctgaagacgtgaaaggggagagagaggggggaatgacatgcagcaaaaggccgcaggtcggagtcgaagggtaaacctctatatgtgggcgccccctctaccaactgagctatctgggcgcctgctaaggaactttttttgctgacttttttagggctTAATGTCGACTGtcgctgtaagtgagaagactatttGAGacgtgcaataatacagtcaaagatatttgacttttctcttaaataaaagcatgtcaataaactaaaattattttttttccagcgTGGCCCATACTGaggttgagtttgacacccctgctttaaACGTCAAAAGCTTAGACTGATGAAGGTTGGCCTGTTGTTGCCTCTAACCGTGTCCGGCAGCTGAAGTCAGTTCCGAGCCGTCCTGTTCCTTTAAACGGTGGCGTGGTCATCCGATCCTGGTGTCAGGTAGATACAGCTACGGGTCACACGGGGCCCATTCATTCTTCAGAGGAACAAAAGCCTGCACGATGACTACCACAGTTTGACACCCCCAGCTTTAAGGAACCGTTGTAAAATAAAGGGTTACACTTCACTCGAAGGTCTCTatgtaagagtgacatgacacggtcatgaacgtgtcatgaaCATCatgaacaagtcataaatgCTTATGACATTAAGCTTCTGTCAGTAAGGGTCATTcgggttttgtcatgacaagttagggttagagttcatgtgttcatgaccgtgtcatgaacacatgaccgtgtcatgtcactcttatccactccttccagaaaaacgcggagtttttttgtgattgttgcggggcaaaaatccttgattatgcggcacgttttcttaaaaaatgcgatggaatatgcgggatatttatgcaattttatgcgatgaaattgcgggaacttgcaaaaaactggtgtttgatgaaaaagagagaaaaaaaaaaagtgatttcccccccaacaccctgcttttcgatgatgtcaattacgtcacttcataacgttcccatgacaacaggggaaaatggctgctcttgtgtgaagtaaacatttttcaactttctgctaagatatattacgggacttttttgcaacgaaaatgtggggttatgaaatcatgcaagcgccGCATATTTagcgtggaaatcggcaatttatgcagcgaaagtggggcgtatttgaaaaaatgcggcctcCTCCCCCAGCatcaatatgcggactttggctgattatgcgttgaattatgcgatggcataatcgcgtttttctggagggactgacttatgtagataccttcaagtaaagtgttaccaaaataaAGTTCAGTTATAGAGTTTGAATCTAAACGCAGTTAGTAGACTCTCCAGTGGGATGCATTACTTCCTTTCAAATTAATAATTCATGCCCTCGTTtcattgttgtatttttttgtctcttgtTTTCCTGTGGGTGTGTTCAGGGACGAGGCTGGAATACACCGATCAGATATCTATATCGTAGCATGCAATAAAATCGATATCTGCTTGATAAATGAACTCTTAAATCAGTAAAGTTTCAACCATGAAACCCTCAGGAGAGGTTCAGGTCACAGTTGGGATTCGGAGCTACGGGATCACACAACTCAACGCAAGATTTACGTTTGGACATTTATCCCGAACATAAAATGTTCTTACAAACAGATTTGTGCCAATTAGGTTCAAaagttgttgtgttgtgtttttagcaaaatccttgagttttcttttgtctaatcatgtcagctggacttgtagccattatattgtcggctagtttactttatattaaaacatcagattttatgaactgcatgtgttctgtgtgcaggaatctgaatgtgtaaagtaactagtaactaaagtaactagtaaataaagctgtcagatagttaaagggatacgccaccgtttgttgaaatagggcttatcagggtctcccctggctgtagataggtgggccaacgcagcgccgccgctagttagcttagcgtagtgaatggaatcctatgttgccggttagcatgttgtgagtaaaagtgagccaacaaaagacaaaaaaaaacaacctaattacttacactgagacaaaaaaaagcgttggcccacctatctacagccagggtagactgtgataagaactatttcaacagaCGGTGGAGTATCactttaagataagataaaagtTTACTGTCTGTTGCGCCAACAGTCAACAGGTAAcattgaaaacacacaaacataaaaacaagcaTCTGTATGTTCACCCAACATCTGTCACACCTTCAGacgcacacacgctcacacacacacacacacacacacacacattgtgtgtCTCAAATACTGAAACAAAGGTCGGTTTTATTGTTTGACGGCCATAAATACAATGATGATATCATCTTTCTTAAGCCTCTTTATAACAGGATTTGTCAATAGTTGAAGGTTAAAGCGTCAGCGTGCAGAGATATTTCAGTTTGAGTTTTAGAACTTCAGATGTGGGGGGGGGAAACCCAGCTCAAATGTAAATGTCTTTGTAATAAACCCTCCGTTATAATGTTGGAACATGTCGTCACTTTCCCGCTGAGTCATCTTGTGTAAAGTGCGTTTGTGCTTCAATAGGATATCCAAGTCTGCACCAAAACTCCTTTTTAGTTTTCCCTTGTTTTTCTGAAGTTCTCACTTTAGTTTGCTGCCATAACtgggattttttttactgttataAGGAAAGCATAAAGCATAAATCTTAGGATACATTCACATCGCAAGCCTTAATGCTCAAATCTGCAGCGGTGCAATGTAATAAGCAGCTACTCGGCTACATCTCAAAGGtagatattgtactttttactccactacttttgtctgacagctttacgTTACTTTTAAGATGACAATTTTTCACCCCCTTCCTGTCCTGTGAAAACCAGATCTCcaaatgtgttgatgttgaatgtttgtgataaactttAGTGTCCCCGAGAGGCAATttgttgtacagtacaggcataTTGACACATAATCCACGACACAAACATTGAACCGGACATCTAACGTCCAGCACTAGTTATCTaacacataacatacac
>TU3358
CGGACGTGGAAGCAACTAAGTCTTTGAGCGGACTGTTAAGCGGAATAGCTCAGCAAGTGTATTATAACAACAGCGAAATCACGGAGGAGCTGCTGAACAGTGAGTTATACCCCGAGCTGTCGCAGGAGCAGTTCAAGGCCCTGCATGAGAAAATGAAAGGCCTCCTAAAGgaCTCTGAGTTTGTGTGTCTGGAGTTCGATGAAACCAAAGTGAACCAGGTGCTGAAGAAGATGGCTGATATCCAGGAGAGCATTGACAGAATCGTTCACCGCACATAgagaccctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagtgagagtttTTCTCTCAGACAGCGAAGCAGCGCGGTGTGATTCTGACACCGAGAGAGACGAGGTCTGACCGACTCCAGCTGTTTTCTCGTGGCAGACCCGTGTTTGCCAGAGTGGCTCCATCGTGGCTTCGGCACATGCATACAGAGTCAGAACGGACAAACTGTAAGATATATATGATCATCACACACATGATTCACATGTGATTTTGAAGGGCCTCACTTGTTCATGGACCAAAAGttctgtttatttctttttaacctCCCATTAACTCAAAGGGCTGGACTGTTTTAGGTTCCTCTCTGACCATAGCGGCAAAAAACTAAATGCAGCACATCGGGCCGATcttccggcagcaccggagcaattccCTAAAATAAATCCTCATCGATATATAGACTACTTAGGCATCagtgcatgggaaaatagggtcaaAGTTGGagataaaaaaaggaaattacccTTTAATACTTTGCACAACTCATGCAAGTTAAGCATTCAAAGCTCAGCTGACAAAGTCTTGGTCAAAGGTTGGACTGATAAAGCCTGGCCTGTTGAAGACACTTCAGAGCTGTCCTGTTCCTTTAAACCACGCGTGTCACTTTAGGTTcccaatacattttggcccgcctagatttcgtcactttttcaaagttttgtcgcctttttctgaagtttttgtgactttttctgacttttttttccagcggttatttcaaagttttttggtgctttttacaactttttagGGGTTCCTCTTTcgacgtttttattttattttttccgaTGCTTTTGTGACCTTTTTTTGgcgttttttcattttttctatgAAGGCTAAGGATTtgtttttgggggcattttcggcctttattttgacaagaaagctgaagacgtgaaaggggagagagaggggggaatgacatgcagcaaaaggccgcaggtcggagtcgaagggtaaacctctatatgtgggcgccccctctaccaactgagctatctgggcgcctgctaaggaactttttttgctgacttttttagggctTAATGTCGACTGtcgctgtaagtgagaagactatttGAGacgtgcaataatacagtcaaagatatttgacttttctcttaaataaaagcatgtcaataaactaaaattattttttttccagcgTGGCCCATACTGaggttgagtttgacacccctgctttaaACGTCAAAAGCTTAGACTGATGAAGGTTGGCCTGTTGTTGCCTCTAACCGTGTCCGGCAGCTGAAGTCAGTTCCGAGCCGTCCTGTTCCTTTAAACGGTGGCGTGGTCATCCGATCCTGGTGTCAGGTAGATACAGCTACGGGTCACACGGGGCCCATTCATTCTTCAGAGGAACAAAAGCCTGCACGATGACTACCACAGTTTGACACCCCCAGCTTTAAGGAACCGTTGTAAAATAAAGGGTTACACTTCACTCGAAGGTCTCTatgtaagagtgacatgacacggtcatgaacgtgtcatgaaCATCatgaacaagtcataaatgCTTATGACATTAAGCTTCTGTCAGTAAGGGTCATTcgggttttgtcatgacaagttagggttagagttcatgtgttcatgaccgtgtcatgaacacatgaccgtgtcatgtcactcttatccactccttccagaaaaacgcggagtttttttgtgattgttgcggggcaaaaatccttgattatgcggcacgttttcttaaaaaatgcgatggaatatgcgggatatttatgcaattttatgcgatgaaattgcgggaacttgcaaaaaactggtgtttgatgaaaaagagagaaaaaaaaaaagtgatttcccccccaacaccctgcttttcgatgatgtcaattacgtcacttcataacgttcccatgacaacaggggaaaatggctgctcttgtgtgaagtaaacatttttcaactttctgctaagatatattacgggacttttttgcaacgaaaatgtggggttatgaaatcatgcaagcgccGCATATTTagcgtggaaatcggcaatttatgcagcgaaagtggggcgtatttgaaaaaatgcggcctcCTCCCCCAGCatcaatatgcggactttggctgattatgcgttgaattatgcgatggcataatcgcgtttttctggagggactgacttatgtagataccttcaagtaaagtgttaccaaaataaAGTTCAGTTATAGAGTTTGAATCTAAACGCAGTTAGTAGACTCTCCAGTGGGATGCATTACTTCCTTTCAAATTAATAATTCATGCCCTCGTTtcattgttgtatttttttgtctcttgtTTTCCTGTGGGTGTGTTCAGGGACGAGGCTGGAATACACCGATCAGATATCTATATCGTAGCATGCAATAAAATCGATATCTGCTTGATAAATGAACTCTTAAATCAGTAAAGTTTCAACCATGAAACCCTCAGGAGAGGTTCAGGTCACAGTTGGGATTCGGAGCTACGGGATCACACAACTCAACGCAAGATTTACGTTTGGACATTTATCCCGAACATAAAATGTTCTTACAAACAGATTTGTGCCAATTAGGTTCAAaagttgttgtgttgtgtttttagcaaaatccttgagttttcttttgtctaatcatgtcagctggacttgtagccattatattgtcggctagtttactttatattaaaacatcagattttatgaactgcatgtgttctgtgtgcaggaatctgaatgtgtaaagtaactagtaactaaagtaactagtaaataaagctgtcagatagttaaagggatacgccaccgtttgttgaaatagggcttatcagggtctcccctggctgtagataggtgggccaacgcagcgccgccgctagttagcttagcgtagtgaatggaatcctatgttgccggttagcatgttgtgagtaaaagtgagccaacaaaagacaaaaaaaaacaacctaattacttacactgagacaaaaaaaagcgttggcccacctatctacagccagggtagactgtgataagaactatttcaacagaCGGTGGAGTATCactttaagataagataaaagtTTACTGTCTGTTGCGCCAACAGTCAACAGGTAAcattgaaaacacacaaacataaaaacaagcaTCTGTATGTTCACCCAACATCTGTCACACCTTCAGacgcacacacgctcacacacacacacacacacacacacacattgtgtgtCTCAAATACTGAAACAAAGGTCGGTTTTATTGTTTGACGGCCATAAATACAATGATGATATCATCTTTCTTAAGCCTCTTTATAACAGGATTTGTCAATAGTTGAAGGTTAAAGCGTCAGCGTGCAGAGATATTTCAGTTTGAGTTTTAGAACTTCAGATGTGGGGGGGGGAAACCCAGCTCAAATGTAAATGTCTTTGTAATAAACCCTCCGTTATAATGTTGGAACATGTCGTCACTTTCCCGCTGAGTCATCTTGTGTAAAGTGCGTTTGTGCTTCAATAGGATATCCAAGTCTGCACCAAAACTCCTTTTTAGTTTTCCCTTGTTTTTCTGAAGTTCTCACTTTAGTTTGCTGCCATAACtgggattttttttactgttataAGGAAAGCATAAAGCATAAATCTTAGGATACATTCACATCGCAAGCCTTAATGCTCAAATCTGCAGCGGTGCAATGTAATAAGCAGCTACTCGGCTACATCTCAAAGGtagatattgtactttttactccactacttttgtctgacagctttacgTTACTTTTAAGATGACAATTTTTCACCCCCTTCCTGTCCTGTGAAAACCAGATCTCcaaatgtgttgatgttgaatgtttgtgataaactttAGTGTCCCCGAGAGGCAATttgttgtacagtacaggcataTTGACACATAATCCACGACACAAACATTGAACCGGACATCTAACGTCCAGCACTAGTTATCTaacacataacatacac
>XM_039810387.1
ATACATTGACACGAAAACATGGCGGACGTGGAAGCAACTAAGTCTTTGAGCGGACTGTTAAGCGGAATAGCTCAGCAAGTGTATTATAACAACAGCGAAATCACGGAGGAGCTGCTGAACAGTGAGTTATACCCCGAGCTGTCGCAGGAGCAGTTCAAGGCCCTGCATGAGAAAATGAAAGGCCTCCTAAAGTCCATCGCCACAGCAGACATGGACCCCGCCCAGCTGGAGGCCTTCCTCACAGCGCAGACCAAGAGGCAGGGCAGCGGCGGGGTGACCGCCGAGCAGGCCGCCGCCCTCTCTCGCTTCTGGAAGAGCCAGCGAGTCCGAGTGAGGGAGAGCTTGCTGGCTCAGAGCCGCTGGGAGCCCGGCCTCAGGGGCCTCTCCTGGAGGGTGGACCTCCAGACCGCGGCCAGCCGGGGGGACGCAGCCCACAGCGGCCCCGTGGCCCTGATGGAGCTGGAGCTGGGCAGAGCCGGACAGgaCTCTGAGTTTGTGTGTCTGGAGTTCGATGAAACCAAAGTGAACCAGGTGCTGAAGAAGATGGCTGATATCCAGGAGAGCATTGACAGAATCGTTCACCGCACATAgagaccctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagtgagagtttTTCTCTCAGACAGCGAAGCAGCGCGGTGTGATTCTGACACCGAGAGAGACGAGGTCTGACCGACTCCAGCTGTTTTCTCGTGGCAGACCCGTGTTTGCCAGAGTGGCTCCATCGTGGCTTCGGCACATGCATACAGAGTCAGAACGGACAAACTGTAAGATATATATGATCATCACACACATGATTCACATGTGATTTTGAAGGGCCTCACTTGTTCATGGACCAAAAGttctgtttatttctttttaacctCCCATTAACTCAAAGGGCTGGACTGTTTTAGGTTCCTCTCTGACCATAGCGGCAAAAAACTAAATGCAGCACATCGGGCCGATcttccggcagcaccggagcaattccCTAAAATAAATCCTCATCGATATATAGACTACTTAGGCATCagtgcatgggaaaatagggtcaaAGTTGGagataaaaaaaggaaattacccTTTAATACTTTGCACAACTCATGCAAGTTAAGCATTCAAAGCTCAGCTGACAAAGTCTTGGTCAAAGGTTGGACTGATAAAGCCTGGCCTGTTGAAGACACTTCAGAGCTGTCCTGTTCCTTTAAACCACGCGTGTCACTTTAGGTTcccaatacattttggcccgcctagatttcgtcactttttcaaagttttgtcgcctttttctgaagtttttgtgactttttctgacttttttttccagcggttatttc

Function

symbol description
commd1 Predicted to be involved in several processes, including copper ion homeostasis; negative regulation of protein localization to cell surface; and regulation of cellular protein metabolic process. Predicted to be active in endosome. Orthologous to human COMMD1 (copper metabolism domain containing 1).

NR:

description
PREDICTED: COMM domain-containing protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU3357 True 4680 TUCP 0.51 3 7225340 7240128
TU3358 False 4323 lncRNA 0.42 3 7225340 7240128
XM_039810387.1 False 1428 mRNA 0.51 3 7228614 7240150

Neighbor

gene id symbol gene type direction distance location
b3gnt2a NA coding downstream 1478 7158870 ~ 7223862 (-)
zgc:66455 NA coding downstream 70017 7140734 ~ 7155323 (-)
LOC120569746 NA coding downstream 429732 6795494 ~ 6795608 (-)
LOC120569800 NA coding downstream 430624 6794604 ~ 6794716 (-)
LOC120569742 NA coding downstream 431134 6794092 ~ 6794206 (-)
LOC120565981 NA coding upstream 1670 7241820 ~ 7246413 (-)
LOC120562943 NA coding upstream 9431 7249581 ~ 7255345 (-)
LOC120565143 NA coding upstream 52397 7292547 ~ 7307876 (-)
usp34 NA coding upstream 200920 7441070 ~ 7551615 (-)
xpo1a xpo1,LOC103359566 coding upstream 313882 7554032 ~ 7582024 (-)
G2392 NA non-coding downstream 57513 7166432 ~ 7167827 (-)
G2367 NA non-coding downstream 97931 7126802 ~ 7127409 (-)
G2362 NA non-coding downstream 139055 7085358 ~ 7086285 (-)
G2360 NA non-coding downstream 143872 7081247 ~ 7081468 (-)
trnae-uuc_9 NA non-coding downstream 182322 7042947 ~ 7043018 (-)
LOC120564702 NA non-coding upstream 23541 7263691 ~ 7268389 (-)
LOC120568064 NA non-coding upstream 31669 7271819 ~ 7276543 (-)
LOC120568185 NA non-coding upstream 193766 7433916 ~ 7441067 (-)
G2451 NA non-coding upstream 196324 7436474 ~ 7438272 (-)
G2743 NA non-coding upstream 392224 7632374 ~ 7633344 (-)
trnae-uuc_1 NA other downstream 202152 7023117 ~ 7023188 (-)
trnae-uuc NA other downstream 203695 7021574 ~ 7021645 (-)
LOC120571633 otx1,LOC102233826 other downstream 207681 6999171 ~ 7017659 (-)
LOC120565104 peli1,LOC103372217,LOC100709940,LOC102294912,LOC101486541,LOC108247092,LOC107382286 other downstream 286353 6889288 ~ 6938987 (-)
vps54 vps54 other downstream 349103 6808752 ~ 6876237 (-)
LOC120569296 NA other upstream 91806 7331956 ~ 7372558 (-)
akt3b akt3,LOC103470003,LOC103150748,LOC100692017,LOC108246299,LOC101174244 other upstream 408692 7648842 ~ 7690587 (-)
G2752 NA other upstream 499674 7739824 ~ 7763948 (-)
capn9 capn9 other upstream 695790 7935940 ~ 7957621 (-)
G2840 NA other upstream 967102 8207252 ~ 8209535 (-)

Expression


Co-expression Network