sec23b (LOC100697981,LOC102779165,LOC101466658)


Basic Information

Item Value
gene id sec23b
gene name LOC100697981,LOC102779165,LOC101466658
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 16064549 ~ 16078343 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039805913.1
AACACGTCATTCTAGTAAAGTGCAGGAGCCGGCTGATGGAGTGATCCCCTCACCGACTGTCGTCTGTCTGTCCTGTACATCCGTCTGCTTTTATCTCCAAATGCTCTAATTTATTTTGAACATAGCAGTTCATTTCGCCCTTGTCTAAACCGGAGGACAACCTGATACACAGTACAAGCTCGGTGATGGCGACCTACCAGGAGTTTATCCAACAGAACGAGGACCGGGATGGGGTGAGATTCAGCTGGAACCTCTGGCCCTCCAGCCGCCTGGAAGCCACCAGGCTAGTGGTCCCAGTCTCCTGCCTCTTCACACCACTCAAGGAGAGGCCTGACCTGCCGCCGGTCCAGTACGAACCAGTCCTGTGCAGCCGGGCCAACTGCAAGGCAGTGCTCAACCCACTATGTCAAGTTGACTTCAGAGCAAAAATATGGGCGTGCAACTTCTGCTTTCAGAGAAACCCAttCCCTCCCTCTTATGCAGGCATATCCGAAGTGAACCAGCCAGCTGAACTCATGCCACAGTTTTCTACCATTGAGTACATAGTACAGCGTGGACCCACGCCCCCTTTGATCTTCCTTTATGTGGTGGACACGTGTTTGGAAGAAGAGGACCTCCAGGCCCTTAAGGAGTCCCTGCAGATGTCCCTTAGCCTGCTGCCGCCCAACGCCCTGGTGGGCCTCATCACCTTCGGACGCATGGTTCAGGTTCACGAGCTCAGCTGTGAGGGGATCGCCAAGAGCTACGTGTTCAGGGGCACCAAGGACCTCTCCTCCAAACAGATCCAGGAGATGCTGGGTTTAACAAAGGCAGCCGCATCAGGACAACAGGGTCGCCCACAGGCACCTCAGGATGCTGCAGCCTCTTGCAGGTTCCTTCAGCCCGTGCACAGAGTCGATATGAACTTGACTGACTTGCTGGGTGAGCTTCAGAGAGACCCGTGGCCTGTCCCTCAGGGCAAACGGCCCCTCCGCTCCACTGGTGTTGCACTGTCTGTTGCTGTTGGTCTGCTGGagGGTACTTTCCCCAACACAGGGGCTCGTGTGATGCTGTTCATCGGAGGGCCCCCCACCCAGGGCCCAGGCATGGTGGTGGGAGACGAGCTGAAAACCCCCATCCGCTCCTGGCATGACATCCAGAAAGACAACGCTCGCCATTTGAAGAAAGCCACCAAGTACTATGAAGCCATGGCCAACCGCTCAGCAGTAAATGGCCACTGTATCGATATCTACGCCTGTGCCCTGGACCAGACGGGACTGCTGGAGATGAAGTGCTTATCTAATCTCACCGGGGGGCACATTGTGATGGGAGACTCCTTCAACACCTCCCTGTTCAAGCAGACCTTCCAGAGAGTCTTCAGCAAAGACTACAACGGAGACTTCCGCATGGCCTTCGGCGGCGTCCTGGAGGTCAAGACATCACGGGAAGTGAAGGTTTGCGGGACCATTGGACCGTGTGTTTCACTCAACGCCAAGGGTTCCTGCGTTTCAGAGAATGAGATGGGTATCGGTGGCACGAGCCAGTGGAAAGTGTGCGGTATCAACCCCTCCACCACTTTGGCCCTTTATTTTGAAGTGGTGAATCAGcACAACGCACCAGTCCCCCAGGGTGGCCGAGGGGTGATCCAGTTTGTAACCCAGTACCAGCACTCCAACACACAGAGGAGGATACGGGTCACTACCATCGCCAGGAACTGGGCAGACGCACAGTCCCAAATCCAGCACATTGAGTCGTCATTCGACCAGGAGGCGTCCGCAGTGCTCATGGCTCGCCTGGGAGTCTTCAGAGCCGAGTCGGAGGAGGGGCCGGATGTCCTGCGATGGCTTGACAGGCAGCTCATCCGCCTGTGTCAGAAGTTCGGCCAGTTCAACAAAGATGATCCTACATCCTTCAAACTGTCCGAGTCTCTGTCCCTCTACCCACAGTTTATGTTCCACCTGCGGCGGTCGCCGTTCCTGCAGGTGTTCAACAACAGCCCCGATGAGTCGTCCTATTACAGACACCACTTTGTCAGGCAGGACCTGACCCAGTCCCTGATCATGATCCAGCCCATCCTCTACTCGTACTCCTTCCACGGGCCACCAGAGCCCGTTCTCCTGGACAGCAGCAGTATCCTGCCAGATCGAATCCTGCTGATGGACACTTTCTTCCAGCTGGTTATCTACCATGGAGAGACCATAGCCCAGTGGCGGAAGGCCGGCTACCAGGAAATGGCAGAGTACGAGAACTTCAAACAGCTGCTGCTGGCTCCACTGGATGACGCCCAGGAGATCCTACAGACTCGCTTCCCCATGCCGCGCTACATCGACACGGAGCACGGAGGCTCACAGGCTCGCTTCCTGCTCTCCAAGGTCAACCCCTCGCAGACCCACAACAACCTCTACGCCTGGGGACAGGAGACAGGGGCCCCGATCCTGACTGACGACGTCAGCCTGCAGGTCTTCATGGACCACTTGAAGAAACTGGCAGTTTCCAGCTCTGCGTAGACGACGCCTCTATTCCACCACAAAGAGAGAAGGAGTGATCTGACATTCCCGTTCTGACATAAGGATCCATTAACATTTCCCCTTAACAGGAACCAAACCCAGACAGTCTACTGTATGTGTCTTTTCTGGAGTCATGTGTGACATATCCATGCTACAAAATGAAcaggaaaaaaagggggggggggtagcaCATTCCTAATAAGAACACATTTCTACTCATTTTCATTAACATGCTATTTATGAGAAACGGCTTCAGTACTCCAGACTGTCCTCGTAAGCAATATCAAATCCTCTATTTCTCTTTTTATATTTGATATTACCTCTGAAACGCAGAATGATTAGACTAATtattcttgttttctttttgtttgtttgtcctaAAAATGTGTCTACTGCATCAGACTTAGTTGAAGACGCTGTTTGAATAGGCCTCTTTTATGTGTTTGCTTTGTCTATAGCTAAAGATGAAATGCCCAGAGTTTTCTCATTAATAAATTATAATGGTACTTCTGATGCTGATTTAAGAAATGTTCACAGGGCTAATCGGTCTTCACACTGATGACTTGTTAACCACAGTTTATTTGacatatacatttaaaatcCTACGTGGATTATACCTTTTTAAGCGTTTTCCAAGAAAATTCCCTCTGAATAATGAGGATTAATGTTCTGAGGAATGGAAGTCGATCACATCAAGTCAACCGAGAGTGACTCTGTTTTCAATGACGAACATTTCGCTTTATTTTAACTTGATAGGGCACTGTAGTTCAGTCCTCTCATCCCGTCTCATCACCATCTGGTATTTTGCACCCGATGATTGCCCAAGTGTCTTTGTAATCAAACTTTAATATACTTTAAGACTGTATAAAAGGGACAGTAGTTTGATTTAGATCCTGTCTGGATGCTTAACGCTATCCATATAAAGCCCTGTCGGCAGGAAAcaag

Function

NR:

description
PREDICTED: protein transport protein Sec23B

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport biological_process
GO:0048821 erythrocyte development biological_process
GO:0051216 cartilage development biological_process
GO:0048702 embryonic neurocranium morphogenesis biological_process
GO:0030127 COPII vesicle coat cellular_component
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K14006 SEC23; protein transport protein SEC23

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039805913.1 True 3431 mRNA 0.51 19 16064549 16078343

Neighbor

gene id symbol gene type direction distance location
LOC120561637 gsg1l,LOC104954731,LOC103358062 coding downstream 6196 16050764 ~ 16058353 (-)
nomo LOC446065,LOC107089097,LOC105931477,LOC102292868,LOC102196167 coding downstream 29934 15994372 ~ 16034615 (-)
LOC120561525 xylt1,LOC102778305 coding downstream 165148 15816338 ~ 15899401 (-)
LOC120564766 NA coding downstream 640163 15419252 ~ 15424386 (-)
gpank1 gpank1 coding downstream 649586 15410498 ~ 15414963 (-)
LOC120567135 LOC102194342,LOC101467413,LOC103358059,LOC102294944,LOC100712572 coding upstream 168061 16246404 ~ 16283686 (-)
wfikkn1 wfikkn1 coding upstream 274298 16352641 ~ 16356941 (-)
LOC120558696 rab40c,LOC103358055,LOC100700672,LOC101469960,LOC107089104 coding upstream 278720 16357063 ~ 16362428 (-)
LOC120558661 NA coding upstream 286922 16365265 ~ 16381421 (-)
pdcd11 NA coding upstream 305443 16383786 ~ 16402403 (-)
G4886 NA non-coding downstream 14920 16049388 ~ 16049629 (-)
G4881 NA non-coding downstream 15669 16047844 ~ 16048880 (-)
G4860 NA non-coding downstream 70464 15993604 ~ 15994085 (-)
G4815 NA non-coding downstream 282796 15781397 ~ 15781753 (-)
G4799 NA non-coding downstream 328371 15735789 ~ 15736178 (-)
G4915 NA non-coding upstream 116931 16195274 ~ 16257571 (-)
LOC120558721 NA non-coding upstream 233586 16311929 ~ 16315887 (-)
G5068 NA non-coding upstream 246672 16325015 ~ 16325323 (-)
G5069 NA non-coding upstream 247178 16325521 ~ 16325846 (-)
G5081 NA non-coding upstream 269923 16348266 ~ 16349983 (-)
sdk1a sdk1,LOC104962449,LOC103362694 other downstream 378910 15426544 ~ 15685639 (-)
ubl5 ubl5 other downstream 1160320 14901146 ~ 14904229 (-)
LOC120555938 LOC103372451,LOC105939179,LOC103462061,LOC108245380 other downstream 1345447 14712144 ~ 14719102 (-)
LOC120558548 pde4a,LOC102299733,LOC102791271 other downstream 2022039 14018902 ~ 14042510 (-)
G4168 NA other downstream 2497283 13531753 ~ 13567266 (-)
LOC120558720 NA other upstream 267375 16345718 ~ 16347922 (-)
LOC120569099 NA other upstream 1333710 17412053 ~ 17421098 (-)
LOC120560175 NA other upstream 1632296 17710639 ~ 17713898 (-)
epn3b LOC102786458,LOC100695148,LOC103373411,LOC101478063,LOC105919984,LOC107373120,LOC108247943,LOC102303243 other upstream 1739164 17817507 ~ 17835761 (-)
LOC120556682 NA other upstream 1757561 17835904 ~ 17848037 (-)

Expression


Co-expression Network