si:ch211-216l23.2 (LOC104955245,LOC103371405,LOC106964371)


Basic Information

Item Value
gene id si:ch211-216l23.2
gene name LOC104955245,LOC103371405,LOC106964371
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 35277266 ~ 35294136 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039809369.1
AGAAGAGCTGCTCCTCCTTCTCCTACCCACTACAGGGAGGGATGTAGCGCGGATCACTGGTGGAGTAACCTCGGGAAATATTTTCTCCTCAGCCTGTGATTAAAAGCTTAGCTAGGTTTATTTGGTTGAAGTTGCAGTGCAGATAAAATGTCGTCTTGGGCGAAATCGTCTGCATCAGCCCGGCGGCCACCAGCTAACCCAAACGGAAGTGCTCAACAACTGCGTCTGTTTCGGAGAGCAGCGCCTTACCccaacagagaggagaggaccgAAGAGCTCAAGGATGCCCTGGAAAGTTATGAAGATATAGACCAAATTCAAAACTACAGTGGAAGTGTGAAGTACGAGGGGTACAAGCATCAGCCAAATGccaagccAGACGGCTGCACCCCAGCAGACCGACGTAAAGCCCTGTATCAGAAGTTCTACCGACAGGTGCAGGACGAGAAGAAGCCGGCCGACTGTGTGGTCCTCTCTGTCACTAACCGGTGCCTGGATTACCCCAAATCGCTAAGCCAGTGCTTGCAGGAGCGTGGCCTGTCAGTGGAAATGCTCTACCTTCAGGCGGAATCGGGCCTGACCCGGGCTCTGCAGGATGTCCGAGCAGAAGGCTCCCCGTTATGTATTCTGGTGGAGCAGACAAACGTAGCTCTGTCCTCCTGCACTGTTATCATATTCTCAGAATCCCTCAAAAtcCATCGCAACATGCCGAAAGACCAGGCCATGGATTTTGTTGCAGCCGAGTACAGTCACAGGCGCGTCAAAGAGCGCCCGCCGAAGGACCCGGCAGACAGCGCAGCCCAGGCGTCGCAGCTGCTGGATGACTACCTGGACCGAGAGAAGATTGACCGCCACACTGTTCCCTCCGAAACCCGTCAGCTCCTCTTGCTGTTTGCTGAAGGGGTGCATCTCTACCCTGAGGAGATGGAAACCATCTCTGAGTATGTCCGTTCCCGGCAGGAGCACCTACAAGCCTCCCACACGGAGGGGAAGAGGGGTTACATGTTACCTCCCGGCCTGGGCAAGCCGCCTCCTCTGCTCCCCACTCCACCCGGACCCCCTCAGTCTGCCGGAGCAGGGGGGCCCATGATGAGCCACCCCTCGCCACCCGCTGCTCTCCTGCCTTCACCAGgctcTCATCCCAAAACCAAACCACCTCCGCTGCTGTCCCTGCATCAACCTCCTGGTCCTTCATTAGGGGCCTCAGCTTCCCGAGGCCCCCTGTCCTCACACAGCTCCTACTGTGGCCCCCCTATGCCTCGTGGGCCCCTACACCACCACCCTCCTCCATACCACCAGGGCCCCAGGGGCCCTCACACAGGCAGAGGAGCCCCACCTTCTCTAAAGAGTTGCCGCCCTCCACTTCTCGCTTCTCCAGGTGCCCCTCTTCCACGACCGGGAGGCCCGCGACACTAAGAAATGACACAGACATCCACTCAGACAGACcttctcatacacacacacaaacacacacacacacacacacacgcacacacagtgtaACACATGCAGGCTCCGTGGGCCAGCAGCGTTTTGAACGTTTCACCTAACTGGAGAACAGAAGACTCGTGGCGCCTGCGTAGGATACCTGTtgtgacccttttttttttttttttttttttaataaaatagtaAACCACACTCAGTTAGAGGAAAAAGATTGTAGTTAATGTTAGATATTATCTTATTGTGGATGGATTGATGAAAGATGGCATGGGGTATTCTAATGACTCATCATTTTAAGTATTTTTCCCAACATCCCTCGGTTATtgttcatttcttttctttagtaTGTACTGTGCTTCTCAttcaaagagaaaagagaaaaaaaagctaataacaacgtatgtatgtattttcagTTTGCTTTTTTTGTGGTGGAGACTATAGTGACCAGCTGCACAGGATAAACCGTGAACATCTGACTTGCTGAATGCACTAAAGATCCTGGTCACCAGTGGACAGCTGGGTATTGGTGGTCTCACATGGCTATAGGACTTTTAATGTTTCTGTATATAATGAATATAGCAAGTAGCCTACCTGCTGTATATTGTGTTTCAAGATGGTGCTTAAGATTTCACATGGATTTCTTTAAAGATTCTCTTGACCTAAGAatttcaatataaaaaaaaaaaatattaaaagttttttttcttaca

Function

NR:

description
nuclear receptor coactivator 5-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039809369.1 True 2159 mRNA 0.51 9 35277266 35294136

Neighbor

gene id symbol gene type direction distance location
setd6 LOC102793369 coding upstream 39229 35227019 ~ 35238037 (+)
trnaw-cca_9 NA coding upstream 66335 35210860 ~ 35210931 (+)
LOC120564717 NA coding upstream 74244 35188845 ~ 35203022 (+)
LOC120564296 NA coding upstream 125037 35138403 ~ 35152229 (+)
phaf1 clg7h16orf70,LOC101484474 coding upstream 187922 35062290 ~ 35089344 (+)
znf423 znf423 coding downstream 44756 35338892 ~ 35507284 (+)
si:ch211-212o1.2 LOC103358434,LOC100695703,LOC102310624 coding downstream 218248 35512384 ~ 35586541 (+)
cbln1 cbln1,LOC104949597 coding downstream 365577 35659713 ~ 35693705 (+)
n4bp1 n4bp1,LOC101465464 coding downstream 724132 36018268 ~ 36048411 (+)
siah1 siah1,LOC102794717 coding downstream 771492 36065628 ~ 36106450 (+)
G89969 NA non-coding upstream 110156 35166738 ~ 35167110 (+)
G89960 NA non-coding upstream 151125 35111312 ~ 35126141 (+)
G89950 NA non-coding upstream 230611 34932900 ~ 35046655 (+)
G89942 NA non-coding upstream 462340 34814403 ~ 34814926 (+)
G89941 NA non-coding upstream 478948 34783907 ~ 34798318 (+)
G90125 NA non-coding downstream 400771 35694907 ~ 35695485 (+)
G90126 NA non-coding downstream 401869 35696005 ~ 35696764 (+)
G90131 NA non-coding downstream 403361 35697497 ~ 35697701 (+)
G90138 NA non-coding downstream 476860 35770996 ~ 35771401 (+)
G90151 NA non-coding downstream 618935 35913071 ~ 35913280 (+)
LOC120563677 gnao1,LOC103367675,LOC108249535,LOC107660763,LOC100693875 other upstream 286854 34847563 ~ 34990412 (+)
G89836 NA other upstream 841949 34434089 ~ 34435317 (+)
G89813 NA other upstream 856085 34381836 ~ 34421181 (+)
G89811 LOC100698998 other upstream 914889 34360484 ~ 34362377 (+)
jph3b jph3,LOC103360672 other upstream 2047156 33118201 ~ 33230110 (+)
G90142 NA other downstream 490558 35784694 ~ 35785416 (+)
anapc13 anapc13 other downstream 1221875 36516011 ~ 36517921 (+)
mt2 NA other downstream 1236837 36530973 ~ 36531996 (+)
wfdc1 wfdc1,LOC102778323 other downstream 2728241 38022377 ~ 38034694 (+)
G90583 NA other downstream 2760373 38054509 ~ 38055564 (+)

Expression


Co-expression Network