phaf1 (clg7h16orf70,LOC101484474)


Basic Information

Item Value
gene id phaf1
gene name clg7h16orf70,LOC101484474
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 35062290 ~ 35089344 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039808040.1
AACACAGGAAGTTGAATTCATCAGCTGATCCTGCTGGCTGTTGTTGATGCCTGAAGTTGCTGTTGTTTGGACACTGTGTTGCTCTTATCTGCTGCTGACATTGAAGACACATTAAACCCGACCGAGGGACACGGTGGGCATTTACCGACTGACGAGCTTATGAGTTACAAGACAAGCGTCTCACAGTGAGGACTTTGAATTTGCGCACTAGCGGCAGAAGAGCTAGCTCCAAAGCTTGAACCTTTGGTGAAAGAaaagacagcaaaaaaaaaaactgccgaCGGCTTGGCGTGCTGCCTTTTGTTTATCTCGCGCTAGTCTGAACCGCGATATTAATTTTCTTTGTCttgaatttagttttttttctgcacataCGTTATTTATATTTGTACTTTATTACCAGTACGCGGAGGGTCAGCTAGCTCGTCGGCTAACGTTAGCCCATAGCGCAAAAAAACAACTGTCTTGTTGTCAAGCTTTGATGCTTTCGTAACCGCCCAGCAGTGTCAGATAACGATAGCTAACCGTGAGAATAGTCGTGCCTCTAGTTTTTAAGTGCTTGCCACTGGATCAGGTGCTTCGTTGAAGACGCAGGACAGCACTGCAACCGAACAAGTCCATGTTAAATCGGAGCCTGCTggagatgtgtgtgtctgttgaacGCGTCTGACTTATCGGTTTGTTTATTCCTGACTTCGAGCCAAGTgaactcagtttttttttcttcttcttcttatccGTATCGATTTGAAACCACACAAACAAGTAATAGGTTAACTGACAGCTGGCCTGGTACGTTTTAGGTTGCGTAATTTGTGTGCAAAGCTGTCCGTCTTTGCTGGGGAACTTGTTAAACTGTTATTTTAAACGTATGTATCTCTGTAAGCATTAGGTGTTCAGCCACAGGTGGCTCTGTGGATGTCATTTTGACTATTCATATATGACGTGAGAAGGCGGCGACCTTTTACAGATTTTAGATTGAGTAGCTGTTTGATGCTCACACTCAGAAAAACAAGTAGATAAGAGTTATGAATTAAAGTAGCCTTCTGAAACTATTGTGAGACTGTGCTGTGATCAGGGAAAGACAGGCGAAGAGAAAGGGTCCCTCAGAGGGTCCCCCTTGTGTGTTGAGGTGAGGTGagctgcccccccacccccccacacacaaacacacactacttGCCAATGCTGGATCTGGAAGTGGTGCCTGAGAGATCACTAGGAAATGAGCAATGGGAATTCGCCTTAGGGATGCCATTGGCCCAGGCCATCTCTATTCTGCAGAAACACTGCCGCATTATTAAAAATGTCCAGGTGCTATACAGTGAACAGACGCCACTCAGCCATGACCTCATACTGAACTTGACTCAGGATGGGATTAAACTGCTGTTTGATGCCACAAGTCAGAGACTCAAGGTGATTGAAGTGTATGACCTGAGCAAAGTCAAGTTGAAATACTGtccttttcaactttcagtttttttttttttgtggtgttttttcGCCATTGCCCCCACGATAGAGCAAATAGACCAGTCATTCGGAGCTACGCATCCTGGAGTTTACAATGCTGCCGAGCAGTTGTTCCATCTCAACTTTCGCGGCCTGTCCTTCTCCTTCCAACTGGACTCATGGAATGAAGCTCCAAAATACGAGCCTAACTTTGCCATGGGTTTGGCCTCCCTGCAGATTCCACACGGGGCCATGGTCAAGAGGATGCACATCTACACTGGCAACAACCTGCAAGAaacaagAGCTCCGGCGATGCCGTTGGCTTGTTTCCTTGGTAACATCTTTGCAGAGTGTGTGGATGTCCTGAGAGATCTGGCAGGGCCTCTGGGGCTCAAACTCCGCCTTCTCACTGCAGGCTGCGGTCCGGGTGGGATGGCTGACGGTAAAGTGAGGTCCCTAGAACGGAGCATCTACTTTGGAGATTCTTGTCAGGATGTACTGGGTGCTCTGGGCTCGCCACATAAAGTCTTCTACAAGTCTGAGGACAAGATGAAGATCCACTCTCCATCTCCTCACAAGCAGGTTCCCTCCAAATGTAACGACTACTACTTCAACTACTTCACCCTCGGAGTGGATATCCTGTTTGACTCTACAACTCACCTGGTTAAGAAGTTTGTCCTCCATACCAACTACCCCGGACATTACAACTTCAATATATATCATCGCTGTGACTTTAAGATTCCACTTGTCATTAAGAAAGATGGAGCTGATTCTCAGACGGAGGACTGCATCTTAACCACCAACAGCAAGTGGGATCAGATTCAGGAAATGCTCGGTCACCCGATGGAAAAACCAGTCGTGCTCCACAGGTCCTCGTCAGCCAATAACACCAACCCCTTCGGCTCTACCTTCTGCTTTGGACTGCAGAGGATGATCTTTGAGGTGATGCAGAATAACCACATAGCATCAGTGACCCTCTATGGTGCTCCACGGACCGCTAGCCAAGCCCGACCTGAATCCAGCAGTAGTTCCCACTGAACAAGTCACCAGAACCACATCTCATTCTGGCCTGTCCTGAATCTAGCACCTCTGCTGACTGAACCTCTAACCCAGAGCCAGATTCGTAACCAAGCAGACCTACCAAGTCACCAACAAAGTCATTCATACCCAGCGCAGATGCTACTCATCGAACCCGAAACGCAACCAGAATAACCAAGTCCGACCTGGCGTTaatcacccttttttttttttccctggtGGGTGGTCCTAAGACTTTGCTCTTCTGATCGGACACACCCAGTCGGCACGGTCAACCCGACCCAGACTAGCTCAGGGTCGAGTGACGCGGTCGCAGTGCTGGACCACTGAtgctttgaaaatgaaaccaatcCAAACGACGTCTTGGTTGCGCGGGAATATCGCAGCGGTGCTGCGAACTGACGTGGTGAAGAAGTCGTGCTCAACTAGAGCTCTCCTGTTTCCATCCAGTGACTGAATTAGCCCAGGACCACAGAAGAAGAGCTTGTCCAGACTGTAGTTTGGATGCCATGGTTCCACCAGTAAGGTGTCATGGCAGCCTGTATATGACAATAACCTCCATTTACATTTTGTGGTGAAATGATTCAGCATTTAATTATCATCGTGCAAAAGAAAAATCTCTTACGGAAAACTGCGGTGGCCAAAAGTCTTGAAAACAAAACTCTTGCTCGAACCCACTGAATAAACGCCAAGCATCAACCGCACTGCCAGCCCAACCGGTACCGCCTGTCTTCCTGCCGCGACTTCAGAACCAGGCCCGACTGGCTCAATGGAAAGCCGGACGCATTAAAAACCGCAAGAACCAAGCCCGCCCGTCCCAATCAAGAGCCATCGGAGCCCAAAACGCATCGGAagctgcaggaaaaaaaacgaCGACGTGagaatccagattttttttcGTACGAGTGAAGAACCAAACGCGCTCAGGGTTTGGAGAGACGTGGCCCAAAAACGCATCCCACGACGGGCCGGGTGAGCCCCGATGTGAAGCCTCTCAAAGCAGAACGACCCAAACGAGGTCAGCGTTATTGTCTCCCTCGTCCAGCTTCCTACTCACGATTCCTCCCCGCTTTTATCAGCGATGcccacaaacaacacacagacacacacacacacactcaagcacAGAGCAGCAAACACCCCATTAACCCACAGCTGTTGTTATTCGCAGCTCTGGGAGTTGGCGTGTCCCGTCTccttgctcacacacacacacacacacacacacacacacacacacacgcacacacgcaaacactgTTTTTTCAAATTGACATTTCAACAGACTtgaattcaaacacacacaccgcattTCAGTTCCCACTCAACTACTATTCTCACACGTATTTCTAATACATGTAAGCTGGTTTATATTTTTTAGCCTTTTTaagcacaaacaaaacaaaacatggagACATGCAGGCATGACACAAGGATTTGCATGAACTTGGCAGATGCTTTTTGAATGAGAGGAAACTTATTATAAGCACAAACCGGCAATCCGTCTTGTTTTATTTGATCCTGCATGTTGTGAGGGGCAGAGGCtcgttttatttctctctgccCTGATTCCCTCATTCACACCATGACCATTTTCATTGTGTTCTCTTGTTACATTTGCACTAATGCACACCTTTTTACTTGATTGGTTGATTGTGCCCTATCCTCCGTGATAGCTTTGTGAAGACATTTggaggggtgtgtgtgcgtgtgtgtgtgcgtgcgtgtgcgtgcactcTTCTCCCTCTTCCTTCATCTCTACACGTGTTCGATGCATTGCAATTCATCCCTCAGCAATGTctgcattttatttcttttgttgaATTGCCAAATGCTCCAGCCAAAGACATTTCAGGATGATTTCATTTGATCTGCTCACACTGTAGTCTCCTGTCCGCACCTGTcccaaaggagagagagagagagagctgcgtGTCGGCCGCCTCCCTTCTCTCGCGTGTGCCGCGGTAACGACTCTAAATTCAGCTCCTGGTGTCTGTAAACCCCGACAGTAATTGCACGACATGAATAGCTGACTCACGCGTGTGTTTTTTGAAACACAATCGGCCTGTCTTTCATCTGGATTTGGTCACTGCCAGAGACCCATTAACAATAGCAACAACTAGCACCGTTGTTATTGTTGTCAGAGAGCTGTAATTTAAAGAATTACCGTTATTCCTCTGTGATTTCAGTACATGTGAACCCATTTAGGAAATGGGGAAGAACATCAGTCATTCCTTCATCCTAACATTTGTTTCCCTTCCCAATGTCTGaatttaaaatctttttaattCTAAGTATTTCAATAAACTGTGTATTCATGTTAA

Function

NR:

description
PREDICTED: UPF0183 protein C16orf70 homolog isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039808040.1 True 4817 mRNA 0.47 16 35062290 35089344

Neighbor

gene id symbol gene type direction distance location
cbfb cbfb coding upstream 7851 35009581 ~ 35054439 (+)
hsf4 hsf4,LOC102290593 coding upstream 250970 34784329 ~ 34811320 (+)
cpne2 cpne2 coding upstream 470491 34525011 ~ 34591799 (+)
nlrc5 NA coding upstream 538966 34451795 ~ 34523324 (+)
LOC120563662 LOC104959125 coding upstream 765726 34284815 ~ 34296564 (+)
LOC120564296 NA coding downstream 49059 35138403 ~ 35152229 (+)
LOC120564717 NA coding downstream 99501 35188845 ~ 35203022 (+)
trnaw-cca_9 NA coding downstream 121516 35210860 ~ 35210931 (+)
setd6 LOC102793369 coding downstream 137675 35227019 ~ 35238037 (+)
si:ch211-216l23.2 LOC104955245,LOC103371405,LOC106964371 coding downstream 187922 35277266 ~ 35294136 (+)
G89950 NA non-coding upstream 15635 34932900 ~ 35046655 (+)
G89942 NA non-coding upstream 247364 34814403 ~ 34814926 (+)
G89941 NA non-coding upstream 263972 34783907 ~ 34798318 (+)
G89911 NA non-coding upstream 345288 34712410 ~ 34717002 (+)
LOC120563685 NA non-coding upstream 419068 34641423 ~ 34643222 (+)
G89960 NA non-coding downstream 21968 35111312 ~ 35126141 (+)
G89969 NA non-coding downstream 77394 35166738 ~ 35167110 (+)
G90125 NA non-coding downstream 605563 35694907 ~ 35695485 (+)
G90126 NA non-coding downstream 606661 35696005 ~ 35696764 (+)
G90131 NA non-coding downstream 608153 35697497 ~ 35697701 (+)
LOC120563677 gnao1,LOC103367675,LOC108249535,LOC107660763,LOC100693875 other upstream 71878 34847563 ~ 34990412 (+)
G89836 NA other upstream 626973 34434089 ~ 34435317 (+)
G89813 NA other upstream 641109 34381836 ~ 34421181 (+)
G89811 LOC100698998 other upstream 699913 34360484 ~ 34362377 (+)
jph3b jph3,LOC103360672 other upstream 1832180 33118201 ~ 33230110 (+)
G90142 NA other downstream 695350 35784694 ~ 35785416 (+)
anapc13 anapc13 other downstream 1426667 36516011 ~ 36517921 (+)
mt2 NA other downstream 1441629 36530973 ~ 36531996 (+)
wfdc1 wfdc1,LOC102778323 other downstream 2933033 38022377 ~ 38034694 (+)
G90583 NA other downstream 2965165 38054509 ~ 38055564 (+)

Expression


Co-expression Network