cpne2 (cpne2)


Basic Information

Item Value
gene id cpne2
gene name cpne2
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 34525011 ~ 34591799 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039808015.1
GTAATGTAGTCCAGTTAGCTTGACGCAGCTCGGTCCATCAGTGCCAGAGAGAAGAGAACAGAGTCCAGGTAGCTACGAGGATGATTTatgttcacacactgttgcgTCTTCCAGGATACTCGGCATAAAAATGGCAACAGCAACATCAATGTTCAGtctttggtagaaaaaaaagctttgggGGATTTCATTTCTCCTCACTGAGCGCggtaattaaaaaagaaaattctaaACTGAAAAGCGATAAAGAAGTTGGACGTAATTTACTGAGGGTAATTCATTGTGACCTCAGACCATGGCATACACTCTAGGCTCGACCGCTGAGGACCAGACACGCAGTGTCGCACCTCAACACTGCATCACTCGGGTGGAGCTGTCCGTCACTGCAACCAGCCTGCTGGACCGAGATGTAGCCTCCAAGTCGGACCCCTTCTGTGTTCTCTTCCATGAGGTGGATGGGAACTGGGTGGAGCTCGGCCGCACCGAAACAGCTGTGAACAACTTGAACCCAGTGTTTGGAGTGAAGTTTCAAGTGGACTACCACTTTGAGGAGATCCAGAAGCTTCGCTTTGCCATGTTCGATGAAGACAAGTGTGCCACTCAGCTCTACGAACATGACTTCCTGGGAGAATTCATTTGCACACTGGGAGTGATTGTGTCCAATAAGAAACTTCACAGACCCTTGATCTTAGCCAATGGGAAGCCAGCTGGCAAAGGATCCATTACGataaCAGCTCAGGAGCTGTCTGACAACAGAATCATCACTTTGACCCTGAGTGGGCGTAAACTGGATAAGAAGGACTTTTTTGGGAAGTCAGACCCCTACCTGGAGTTTCACAAACAGGGAGAAGACGGCAAATGGATGTTGGTGCACAGGACCGAGGTCATAAAGAACACTTTAGATCCAGCATGGAAACCCTTTACTGTGCCGCTTATTTCTCTCTGCAATGGAGATGTGGACAGAAACATCAAGGTCCTGTGTTACGACTATGATAATGATGGAGGCCACGACTTCATAGGAGAGTTTCAAACCACTGCTGCCAAGATGAGTGAAGCCCAGAACTCAGTGGAGGTGGAGTTTGACTGCATCAACCCcaagaaacagaagaagaagaagagttatAAAAACTCTGGCATTATCATAGTAAAGTTATGTAAGATTACAAGAGACTACACTTTTCTGGATTACATACTGGGAGGATGCCAGCTCATGTTTACGGTCGGTATAGACTTCACAGCATCTAATGGGAACCCTCGAGAGCCATCCTCCCTCCACTACATTAACCCACTGGGCAGCAACGAGTATCTCGCTGCCATTTTAGCTGTGGGACAAATCATACAGGACTATGATACCGACAAAATGTTTCCTGCTCTGGGATTTGGAGCCCAACTCCCACCAGACTGgaagGTGTCACACGAATTTGCCATCAACTTTAACCCCACCAACCCATTCTGTTCAGgTGTGGAGGGTATTGCCCAGGCCTACTCTGCCTGTCTCCCTCACATTCGTTTCTACGGCCCAACTAACTTTGCTCCAATCATCAGCCATGTAGCACGTTTTGCTGCCCAGGCACTTCAACAAGAGAATGCAGCGCAGTACTTCACTCTCCTCATTATAACGGACGGTGTCATCAGCGATATGGACGAGACGCGTGATGCCATCGTACAGGCGTCTAAGCTACCCATGTCTATCATCATTATTGGCGTGGGCAACGCAGACTTCGCTGCCATGGAGTTCTTAGATGGAGACGCCAGCGTTTTAAGGTCCAACACAGGAGAGGAGGCTGTTCGGGACATTGTGCAGTTTGTCCCTTTCAGGGATTTCCGAAATgCACCCAAGGAGACACTCGCCAAGTCTGTCCTGGCCGAGCTGCCTCAGCAGGTCACCCAGTACTTTAAACAGCGGAATCTACCGCCCACCAACACAACGCCGAAGTGAGACGGCCAAAGACGAGAGCCCACACGCTGTACAATAGCTCATCAAAGCCTCTCTTCCTGTTTACGGCAAACAAGACAGAAGGAAAGTGTGTATATCAGCTGTGAACAACcatgagttgtggacaaaaaaaaaatcaaaaaaaaaaataaaacattgaagCTATCCCTGCCATTATATTTGCAAAGCTGTTACTGGTTAGAGAATGTTTTGTCAGTATCCAGTGCGAATCCATCAGAAGTGATTTTTCCTGTTTCTTAAAGCTTGAGAACGATAATAATGATGTGTAAAGAACCTTGCATGTCTACAGTGATGGCAGGTGTGTGAAAATGATATGGATATATATGAATATGCAGGTAAAAcactggccttttttttt
>XM_039808016.1
TAATGTAGTCCAGTTAGCTTGACGCAGCTCGGTCCATCAGTGCCAGAGAGAAGAGAACAGAGTCCAGGGTAATTCATTGTGACCTCAGACCATGGCATACACTCTAGGCTCGACCGCTGAGGACCAGACACGCAGTGTCGCACCTCAACACTGCATCACTCGGGTGGAGCTGTCCGTCACTGCAACCAGCCTGCTGGACCGAGATGTAGCCTCCAAGTCGGACCCCTTCTGTGTTCTCTTCCATGAGGTGGATGGGAACTGGGTGGAGCTCGGCCGCACCGAAACAGCTGTGAACAACTTGAACCCAGTGTTTGGAGTGAAGTTTCAAGTGGACTACCACTTTGAGGAGATCCAGAAGCTTCGCTTTGCCATGTTCGATGAAGACAAGTGTGCCACTCAGCTCTACGAACATGACTTCCTGGGAGAATTCATTTGCACACTGGGAGTGATTGTGTCCAATAAGAAACTTCACAGACCCTTGATCTTAGCCAATGGGAAGCCAGCTGGCAAAGGATCCATTACGataaCAGCTCAGGAGCTGTCTGACAACAGAATCATCACTTTGACCCTGAGTGGGCGTAAACTGGATAAGAAGGACTTTTTTGGGAAGTCAGACCCCTACCTGGAGTTTCACAAACAGGGAGAAGACGGCAAATGGATGTTGGTGCACAGGACCGAGGTCATAAAGAACACTTTAGATCCAGCATGGAAACCCTTTACTGTGCCGCTTATTTCTCTCTGCAATGGAGATGTGGACAGAAACATCAAGGTCCTGTGTTACGACTATGATAATGATGGAGGCCACGACTTCATAGGAGAGTTTCAAACCACTGCTGCCAAGATGAGTGAAGCCCAGAACTCAGTGGAGGTGGAGTTTGACTGCATCAACCCcaagaaacagaagaagaagaagagttatAAAAACTCTGGCATTATCATAGTAAAGTTATGTAAGATTACAAGAGACTACACTTTTCTGGATTACATACTGGGAGGATGCCAGCTCATGTTTACGGTCGGTATAGACTTCACAGCATCTAATGGGAACCCTCGAGAGCCATCCTCCCTCCACTACATTAACCCACTGGGCAGCAACGAGTATCTCGCTGCCATTTTAGCTGTGGGACAAATCATACAGGACTATGATACCGACAAAATGTTTCCTGCTCTGGGATTTGGAGCCCAACTCCCACCAGACTGgaagGTGTCACACGAATTTGCCATCAACTTTAACCCCACCAACCCATTCTGTTCAGgTGTGGAGGGTATTGCCCAGGCCTACTCTGCCTGTCTCCCTCACATTCGTTTCTACGGCCCAACTAACTTTGCTCCAATCATCAGCCATGTAGCACGTTTTGCTGCCCAGGCACTTCAACAAGAGAATGCAGCGCAGTACTTCACTCTCCTCATTATAACGGACGGTGTCATCAGCGATATGGACGAGACGCGTGATGCCATCGTACAGGCGTCTAAGCTACCCATGTCTATCATCATTATTGGCGTGGGCAACGCAGACTTCGCTGCCATGGAGTTCTTAGATGGAGACGCCAGCGTTTTAAGGTCCAACACAGGAGAGGAGGCTGTTCGGGACATTGTGCAGTTTGTCCCTTTCAGGGATTTCCGAAATgCACCCAAGGAGACACTCGCCAAGTCTGTCCTGGCCGAGCTGCCTCAGCAGGTCACCCAGTACTTTAAACAGCGGAATCTACCGCCCACCAACACAACGCCGAAGTGAGACGGCCAAAGACGAGAGCCCACACGCTGTACAATAGCTCATCAAAGCCTCTCTTCCTGTTTACGGCAAACAAGACAGAAGGAAAGTGTGTATATCAGCTGTGAACAACcatgagttgtggacaaaaaaaaaatcaaaaaaaaaaataaaacattgaagCTATCCCTGCCATTATATTTGCAAAGCTGTTACTGGTTAGAGAATGTTTTGTCAGTATCCAGTGCGAATCCATCAGAAGTGATTTTTCCTGTTTCTTAAAGCTTGAGAACGATAATAATGATGTGTAAAGAACCTTGCATGTCTACAGTGATGGCAGGTGTGTGAAAATGATATGGATATATATGAATATGCAGGTAAAAcactggccttttttttt

Function

symbol description
cpne2 Predicted to enable calcium-dependent phospholipid binding activity. Predicted to be involved in cellular response to calcium ion. Predicted to be active in plasma membrane. Orthologous to human CPNE2 (copine 2).

NR:

description
copine-2 isoform X1

GO: NA

KEGG:

id description
K24524 CPNE1_2_3; copine 1/2/3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039808015.1 True 2315 mRNA 0.47 16 34525011 34591799
XM_039808016.1 False 2111 mRNA 0.48 16 34525012 34591799

Neighbor

gene id symbol gene type direction distance location
nlrc5 NA coding upstream 1687 34451795 ~ 34523324 (+)
LOC120563662 LOC104959125 coding upstream 228447 34284815 ~ 34296564 (+)
LOC120563664 LOC104959125 coding upstream 290156 34217079 ~ 34234855 (+)
syt19 LOC102786851 coding upstream 317768 34196204 ~ 34207243 (+)
calb2a calb2,LOC104951234,LOC104929127,LOC100698459,LOC102197725 coding upstream 351971 34144101 ~ 34173040 (+)
hsf4 hsf4,LOC102290593 coding downstream 192530 34784329 ~ 34811320 (+)
cbfb cbfb coding downstream 417782 35009581 ~ 35054439 (+)
phaf1 clg7h16orf70,LOC101484474 coding downstream 470491 35062290 ~ 35089344 (+)
LOC120564296 NA coding downstream 546604 35138403 ~ 35152229 (+)
LOC120564717 NA coding downstream 597046 35188845 ~ 35203022 (+)
G89816 LOC103376141,LOC100698998 non-coding upstream 88140 34435743 ~ 34436871 (+)
G89804 NA non-coding upstream 125025 34352344 ~ 34399986 (+)
G89840 NA non-coding downstream 3213 34595012 ~ 34596295 (+)
G89841 NA non-coding downstream 4749 34596548 ~ 34612091 (+)
LOC120563685 NA non-coding downstream 49624 34641423 ~ 34643222 (+)
G89911 NA non-coding downstream 120611 34712410 ~ 34717002 (+)
G89941 NA non-coding downstream 192108 34783907 ~ 34798318 (+)
G89836 NA other upstream 89694 34434089 ~ 34435317 (+)
G89813 NA other upstream 103830 34381836 ~ 34421181 (+)
G89811 LOC100698998 other upstream 162634 34360484 ~ 34362377 (+)
jph3b jph3,LOC103360672 other upstream 1294901 33118201 ~ 33230110 (+)
klhdc4 klhdc4,LOC104957904,LOC104953735 other upstream 1409470 33085856 ~ 33115541 (+)
LOC120563677 gnao1,LOC103367675,LOC108249535,LOC107660763,LOC100693875 other downstream 255764 34847563 ~ 34990412 (+)
G90142 NA other downstream 1192895 35784694 ~ 35785416 (+)
anapc13 anapc13 other downstream 1924212 36516011 ~ 36517921 (+)
mt2 NA other downstream 1939174 36530973 ~ 36531996 (+)
wfdc1 wfdc1,LOC102778323 other downstream 3430578 38022377 ~ 38034694 (+)

Expression


Co-expression Network