G92039 (stx6)


Basic Information

Item Value
gene id G92039
gene name stx6
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 800509 ~ 808192 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU123891
TTTCAACTTCACATCACTCAGAAGtccacagaaataaaataataaagacagACGGACGATGTTTCATACACAGATCAAGGGTTAGGGTAACCCTAATATTAGggttaccctaaccctaataacAGTTTAAAGGCTCcaacacaccaacccgacggccgactgTCAGCAggaaagccagtcggactgatcagtctccccgaggtccaaaaactgtctcagaacacaccgaagcgacgctgacttgagcgtacgttctgctcCTGCgagagacgtaatacgtctccataacagcaggtgtcGCTAATCTGATTTGTCactcaaaaaatgaaaaccgtaaATGAGGGAAAATCTCTCTAGACGTGATAATCACAGAGCACGCTGTGGTCAGTccttgttttcatcagagagtggTGATggtagtcaagaaggatcgttgtCATCACTTGCTGAACACAAGGAAATACTACggctagtaataagaagatactggcgttgGCAGCTCTCGGATTCGCTAGTTaagggttagcactccaccaatcacattgctcattgagtccgactgcccactggccaattcaacaagtcaaatcggccaaaattaAAGCTGacagctcctccgactgacgacggcacgggacacactgaacagacttgagtcaccgacctcgccagactgtctgacgGCTGATTATCAGGTCGATGGGTCAGCGCCTTAACTTCACACTTAACGCCTTCAGCAGTATTTCAGTCATCTGTTCTGCTGCTCTGATTCATGATGCATCAGCAACATTTAAAGTGTTTATTATTAACTTTATCATCATTATTAGTCttagtattattagtatttttattattattattattattattattactatttcaGGGCTCCATGTTGGTTTAGTTGCCAGAATTTCTGAAAGGAAACATTGACGGATGTATTTCTAAATTTAAAACACCGAACATTTCTATAATTTCAGTTTAACTTGAAAAACTTTGATTAATTAGTGAAAATCTGCTGAAGAacaaaatattatattaaaagTTAAAGATGCATAAAATACTGACTTATGTTGTAAAATTACTGGATGGATTTATGAAGGAGTTAAATGTTTATAAATTCTGTATTTAATGACTTTGACTTCTGAacactgcttttattttgtgaaCAGGAACAGGAAACAGACGTGAGATTTCACCGCCACGAGTACCGAAAATCAGATGGTTTGGGACGATGTGATTGGCTGCTTTGTCCGTCACATGACTTTAATAAATTCATATTAAACAGACAGTTACTTCGCTCGCTAACCTTCAGGACTGCACTTCCTGCTgcacttcacaataaaagccttccAGAGgaaaagcttttattgtgaagctgCAGCAGGAAGTGGGTCGTTTAACAAAGTTCACAATTAATACACTTCAGAAttaaaggaaacaaaaaataCTTAGTAAAATAAAACGTTCAAGGATAAACAGCATAAAACAAAGATTCAGTCAgtgaaacaaaaaacacaaaatctgtaaacacaaacaggaagtttagtgttattacattattatatcATATATAGATATCATAAGCTGCAAACTCAGACTAAACAACCAGAGTCATACTGGTGTTAAACTGGGATTAAACCACAGTTAAACTGGAGCAACAGTTTAGGTAAAAGTGGACTTAAACTTAGAGTTAAACTGAGTTTAAATGGGGAAAATACGAAGTCAGAACTGCACTAAACTTGGAATGAAACTAGATTTTAATTCCAGATTCAAGTGGAGTTAAGAGTTTAAAGTTACACTGAAGGTATTACAGCTAAACTGGAGATAAAGTGGAGTGTAAATGGTTATTTTCAGccctttaaataaaacaaacataaaacatcaaaagaacATGTTTTCACCTGTTTGACCTCTGCCATGATTTTAACTAACATTTaaagaaccaaaaaaaaaaaagtgccattCAGTCTGTAGAGTCCAGTAGAGTCAGGTAGGGTGTGGTAGAGTCCGGTAGAGTCGTGCAAAGTCTTGTCCAAATAGTAGTTGCTTCCAACCACAGCACGAAGCCAGTTTTACAAACGCCTCTTTTACTACGGTGGTCTACAGGGAAAATCCTTCCTGGATTTTTAGCTGCAATACCGCAAGAGGACACTGCCAGGCTGAGTGCTGTTCCTGGGGTTCCTGCTAGCTAAACAGAGAAAGTGATTCATCTGAACACATCTTAACATTAGCCTGCTTGTGTTGGATGGATGGCACAAATTGTTCCTATTATCTGCGGCCGAGTGTTTACACAGAGGCAGCGTGTTACGGCCGGGTTTCAGGGTAAAACTGCGGAGTGATCAGCGCGATAATACTAATGTTTTTGTTCTGGCAGCTTGAGTCTCCAAGACTTTGCTCACAATGGTGCAACATTGGGAAAGCAGATAGTGTGGTCCAGTAGAGTCCCGTAGAGTCCATTACAGTCCCGTGGAGTCCATTACAGTTCAGTAGAGTCCATTACAGTTCAGTAGAGTCCATTAGAGTCCAGTAGAGTCTGATATAGTCTGGTATATTCCAGGAGACACAGGTTTAAGGGTTAAGACAAGTTCTCTGCTGACTGGAGGCATCAAtcagaggatgaagaagaggaggatgacAACGAAGAGGATTGCGAGCAACACGCCGATAGCACACCACTGGCGACGGTCGCTGGTCATGTGAGACACTTTGGCCAGTTTCTTCATGACGGTGTCCATCTTAGACTGAGTGTTGTCCACCTCATGAGTGAAGTCATCCAACATCACTGCCTGTTCATCCAGCTCCATGCCGATCCTCTCGGACATGTTCTTCAGGACTCCGATCGTTCCCGACACCAGTTCCAGCTGTTCATCTTGCTGCTCCGCCATCAGCTGTTAAaacgcacacagagagacacacacacacacacacacacacacacacacacacagagagacagacacaca
>TU123892
TTTCAACTTCACATCACTCAGAAGtccacagaaataaaataataaagacagACGGACGATGTTTCATACACAGATCAAGGGTTAGGGTAACCCTAATATTAGggttaccctaaccctaataacAGTTTAAAGGCTCcaacacaccaacccgacggccgactgTCAGCAggaaagccagtcggactgatcagtctccccgaggtccaaaaactgtctcagaacacaccgaagcgacgctgacttgagcgtacgttctgctcCTGCgagagacgtaatacgtctccataacagcaggtgtcGCTAATCTGATTTGTCactcaaaaaatgaaaaccgtaaATGAGGGAAAATCTCTCTAGACGTGATAATCACAGAGCACGCTGTGGTCAGTccttgttttcatcagagagtggTGATggtagtcaagaaggatcgttgtCATCACTTGCTGAACACAAGGAAATACTACggctagtaataagaagatactggcgttgGCAGCTCTCGGATTCGCTAGTTaagggttagcactccaccaatcacattgctcattgagtccgactgcccactggccaattcaacaagtcaaatcggccaaaattaAAGCTGacagctcctccgactgacgacggcacgggacacactgaacagacttgagtcaccgacctcgccagactgtctgacgGCTGATTATCAGGTCGATGGGTCAGCGCCTTAACTTCACACTTAACGCCTTCAGCAGTATTTCAGTCATCTGTTCTGCTGCTCTGATTCATGATGCATCAGCAACATTTAAAGTGTTTATTATTAACTTTATCATCATTATTAGTCttagtattattagtatttttattattattattattattattattactatttcaGGGCTCCATGTTGGTTTAGTTGCCAGAATTTCTGAAAGGAAACATTGACGGATGTATTTCTAAATTTAAAACACCGAACATTTCTATAATTTCAGTTTAACTTGAAAAACTTTGATTAATTAGTGAAAATCTGCTGAAGAacaaaatattatattaaaagTTAAAGATGCATAAAATACTGACTTATGTTGTAAAATTACTGGATGGATTTATGAAGGAGTTAAATGTTTATAAATTCTGTATTTAATGACTTTGACTTCTGAacactgcttttattttgtgaaCAGGAACAGGAAACAGACGTGAGATTTCACCGCCACGAGTACCGAAAATCAGATGGTTTGGGACGATGTGATTGGCTGCTTTGTCCGTCACATGACTTTAATAAATTCATATTAAACAGACAGTTACTTCGCTCGCTAACCTTCAGGACTGCACTTCCTGCTgcacttcacaataaaagccttccAGAGgaaaagcttttattgtgaagctgCAGCAGGAAGTGGGTCGTTTAACAAAGTTCACAATTAATACACTTCAGAAttaaaggaaacaaaaaataCTTAGTAAAATAAAACGTTCAAGGATAAACAGCATAAAACAAAGATTCAGTCAgtgaaacaaaaaacacaaaatctgtaaacacaaacaggaagtttagtgttattacattattatatcATATATAGATATCATAAGCTGCAAACTCAGACTAAACAACCAGAGTCATACTGGTGTTAAACTGGGATTAAACCACAGTTAAACTGGAGCAACAGTTTAGGTAAAAGTGGACTTAAACTTAGAGTTAAACTGAGTTTAAATGGGGAAAATACGAAGTCAGAACTGCACTAAACTTGGAATGAAACTAGATTTTAATTCCAGATTCAAGTGGAGTTAAGAGTTTAAAGTTACACTGAAGGTATTACAGCTAAACTGGAGATAAAGTGGAGTGTAAATGGTTATTTTCAGccctttaaataaaacaaacataaaacatcaaaagaacATGTTTTCACCTGTTTGACCTCTGCCATGATTTTAACTAACATTTaaagaaccaaaaaaaaaaaagtgccattCAGTCTGTAGAGTCCAGTAGAGTCAGGTAGGGTGTGGTAGAGTCCGGTAGAGTCGTGCAAAGTCTTGTCCAAATAGTAGTTGCTTCCAACCACAGCACGAAGCCAGTTTTACAAACGCCTCTTTTACTACGGTGGTCTACAGGGAAAATCCTTCCTGGATTTTTAGCTGCAATACCGCAAGAGGACACTGCCAGGCTGAGTGCTGTTCCTGGGGTTCCTGCTAGCTAAACAGAGAAAGTGATTCATCTGAACACATCTTAACATTAGCCTGCTTGTGTTGGATGGATGGCACAAATTGTTCCTATTATCTGCGGCCGAGTGTTTACACAGAGGCAGCGTGTTACGGCCGGGTTTCAGGGTAAAACTGCGGAGTGATCAGCGCGATAATACTAATGTTTTTGTTCTGGCAGCTTGAGTCTCCAAGACTTTGCTCACAATGGTGCAACATTGGGAAAGCAGATAGTGTGGTCCAGTAGAGTCCCGTAGAGTCCATTACAGTCCCGTGGAGTCCATTACAGTTCAGTAGAGTCCATTACAGTTCAGTAGAGTCCATTAGAGTCCAGTAGAGTCTGATATAGTCTGGTATATTCCAGGAGACACAGGTTTAAGGGTTAAGACAAGTTCTCTGCTGACTGGAGGCATCAAtcagaggatgaagaagaggaggatgacAACGAAGAGGATTGCGAGCAACACGCCGATAGCACACCACTGGCGACGGTCGCTGGTCATGTGAGACACTTTGGCCAGTTTCTTCATGACGGTGTCCATCTTAGACTGAGTGTTGTCCACCTCATGAGTGAAGTCATCCAACATCCTGCAgggaaaacacaaagacactTAACACATGTGGACAGCAAACAACCAGCAAACAACCAGGAAACAACCAGCAAACAATCAGCAAATACCAGGAAAC

Function

symbol description
stx6 Predicted to enable SNAP receptor activity and SNARE binding activity. Predicted to be involved in several processes, including retrograde transport, endosome to Golgi; vesicle docking; and vesicle fusion. Predicted to act upstream of or within Golgi vesicle transport. Predicted to be located in Golgi membrane. Predicted to be part of SNARE complex. Predicted to be active in endomembrane system. Predicted to be integral component of synaptic vesicle membrane. Orthologous to human STX6 (syntaxin 6).

NR:

description
PREDICTED: syntaxin-6

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU123891 True 2963 lncRNA 0.41 4 800509 808192
TU123892 False 2880 lncRNA 0.41 3 802873 808192

Neighbor

gene id symbol gene type direction distance location
LOC120565536 LOC104936604,LOC103369104,LOC102306071 coding downstream 25270 763120 ~ 775239 (-)
LOC120565842 NA coding downstream 90296 708034 ~ 710213 (-)
LOC120565843 NA coding downstream 93181 705867 ~ 707328 (-)
LOC120565555 NA coding downstream 251099 542038 ~ 549410 (-)
LOC120566001 nfia coding downstream 347381 381933 ~ 453128 (-)
LOC120565559 NA coding upstream 8388 816580 ~ 827947 (-)
LOC120565587 NA coding upstream 150367 958559 ~ 962464 (-)
LOC120565560 NA coding upstream 219940 1028132 ~ 1050355 (-)
LOC120565933 NA coding upstream 263726 1071918 ~ 1112572 (-)
LOC120564968 NA coding upstream 316003 1124195 ~ 1125894 (-)
G92038 stx6 non-coding downstream 12013 786220 ~ 788496 (-)
G92037 NA non-coding downstream 17932 782360 ~ 782577 (-)
G92036 NA non-coding downstream 26135 769467 ~ 774374 (-)
G92008 NA non-coding downstream 201739 597465 ~ 598770 (-)
G92001 NA non-coding downstream 229769 566942 ~ 570740 (-)
G92347 NA non-coding upstream 84944 893136 ~ 893378 (-)
G92348 NA non-coding upstream 115113 923305 ~ 984047 (-)
G92354 med16 non-coding upstream 199539 1007731 ~ 1008403 (-)
G92355 NA non-coding upstream 200483 1008675 ~ 1009506 (-)
LOC120565781 NA non-coding upstream 252939 1061131 ~ 1065922 (-)
G92012 NA other downstream 115990 683959 ~ 684519 (-)
patj patj other downstream 165454 596237 ~ 635055 (-)
LOC120565889 LOC101163152 other downstream 233788 553707 ~ 566721 (-)
G91938 NA other downstream 527843 178709 ~ 272666 (-)
G91929 NA other downstream 690314 109660 ~ 110195 (-)
LOC120565586 tmem259,LOC102799979 other upstream 154400 962592 ~ 982757 (-)
LOC120565934 NA other upstream 294190 1102382 ~ 1129854 (-)
lrrc39 lrrc39,LOC102776191 other upstream 420841 1229033 ~ 1240049 (-)
dbt NA other upstream 432017 1240209 ~ 1270261 (-)
G92415 NA other upstream 467740 1275932 ~ 1523081 (-)

Expression


Co-expression Network