lrrc39 (lrrc39,LOC102776191)


Basic Information

Item Value
gene id lrrc39
gene name lrrc39,LOC102776191
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 1229033 ~ 1240049 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU124456
GTCACATTTCATGTGAAGAGACGCAGCATGAAGGACGGCTGCTACGCTGACACGGACGCTGAGCGGGAGGAAGTGTCTGCAGGTCAGAGGTCGTCCTGCCTGTGACATCACGCGGCTGACAGGAAGTGGTCATCATGGTGGGCGTGGTGGCGTGCGGCGCGGTGGCGTCCATCAAAGCTCTGTGGGAGACGAGGATCAGGAAGATCAGccgggaggaagaggagcagaggaagaggaggagggggggcggGGCCAGTGGCAGgctgtgtgttggtgtttggGAGGACCGAGCGGTTCTGGCTCGGCTGAAGCAGAAACTGGAGACAGAAGACGGACGACTGATCCTCCGGATCCAGCAGGAGGACTGGAAGTCTCTGCCGGGCTGCCTGGTCCAGTTCAGCCAGGTCCAGGAGTGGCAGATCCACCGGACCGGCCTGCAGAGCATCCCTCCCTTCATTTCTAGCTTCCAGAACCTTCTAGTTCTGGATCTGTCCCGCAACAGCATCACAGAGATCCCCAAACAGATTGG
>XM_039810888.1
TCGAGGCTAAAATTACCCAGCAGCCCTCGGGGTCACATTTCATGTGAAGAGACGCAGCATGAAGGACGGCTGCTACGCTGACACGGACGCTGAGCGGGAGGAAGTGTCTGCAGGTCAGAGGTCGTCCTGCCTGTGACATCACGCGGCTGACAGGAAGTGGTCATCATGGTGGGCGTGGTGGCGTGCGGCGCGGTGGCGTCCATCAAAGCTCTGTGGGAGACGAGGATCAGGAAGATCAGccgggaggaagaggagcagaggaagaggaggagggggggcggGGCCAGTGGCAGgctgtgtgttggtgtttggGAGGACCGAGCGGTTCTGGCTCGGCTGAAGCAGAAACTGGAGACAGAAGACGGACGACTGATCCTCCGGATCCAGCAGGAGGACTGGAAGTCTCTGCCGGGCTGCCTGGTCCAGTTCAGCCAGGTCCAGGAGTGGCAGATCCACCGGACCGGCCTGCAGAGCATCCCTCCCTTCATTTCTAGCTTCCAGAACCTTCTAGTTCTGGATCTGTCCCGCAACAGCATCACAGAGATCCCCAAACAGATTGGTAAGTACCCCCCTAACAGATTGCGCGTGCTGAGCTACAACAGAGTCCAGTTTGTTCCTGAAGAGCTGAGCGGGTGTGAGAGTCTGGAGAGACTGGACCTGGCCATGAACCGGTCCCTGGACTCGCTGCCGGACCAGCTGAGCAATCTGAAGAAGCTGCAGCATCTGGATCTGTCCATGAACGAGTTCTGCTGCGTGCCGGACTGCGTGGTCGCCCTGCCGGCCCTCCAGTGGCTCGACATGGGGGGTAACAGGCTGCAGTACCTGCCGGAAGACATCCACAGgaTGGAGGAGCTCCACTCTCTGTGGCTGCAGAGGAACCAGCTTGAGAAGCTTCCGGGGAACATTGTGAGGATGCAGCGCCTGGACACGCTGGTCCTCAGCAGCAACTGTCTCCGGGACATCCCCCCTCTGATGGAGGACATGTCCAACCTCAGgtttGTGAATTTCAGGGACAACCCTCTGACTCTGGATGTGATGCTGCCGTGCAGGAAGACGAAGAACCccgatgaggaagaggaggaggaggaggacgaggaggaagaggacagagagatgTTTGGACGAGAGTTCATGCAGATGTACATCCAGGAGGCGAGGAAGAGAGCCTACGCTGTTCTCAACGTGCACCGGGCCAACAGCTGagcCCAACGATGACTCAGCAAACTAAAATAATCTGAAAACATCCTCATCATCTCTtcatatatgtttttatatatttatatttctggaggCTGAAACCTGTTCTAAATCTGTGTATGAGTCCATGTTTGGTAGGTGTGATCTGTTTATATATTACTGTGTGaaaatcagccaatcagagaaaGCCTGAAGACGTGGAAAcactttaataaaaaacatGTCAACACACGTTCACTTTAACTCCAAATAAAAAACCTTCTGTACAAAGTCAGTC

Function

symbol description
lrrc39 Predicted to enable protein serine/threonine phosphatase activity. Acts upstream of or within cardiac muscle tissue morphogenesis; heart contraction; and sarcomere organization. Predicted to be located in M band. Predicted to be active in cytoplasm and intracellular membrane-bounded organelle. Is expressed in adaxial cell; floor plate; myotome; pectoral fin musculature; and somite. Orthologous to human LRRC39 (leucine rich repeat containing 39).

NR:

description
leucine-rich repeat-containing protein 39

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU124456 False 529 TUCP 0.60 4 1236067 1240018
XM_039810888.1 True 1474 mRNA 0.54 9 1229033 1240049

Neighbor

gene id symbol gene type direction distance location
map1sa NA coding downstream 6615 1189910 ~ 1222418 (-)
palm1a NA coding downstream 42463 1168821 ~ 1186570 (-)
LOC120565851 NA coding downstream 61467 1154148 ~ 1167566 (-)
LOC120564968 NA coding downstream 103139 1124195 ~ 1125894 (-)
LOC120565933 NA coding downstream 116461 1071918 ~ 1112572 (-)
si:ch211-152f22.4 NA coding upstream 150192 1390241 ~ 1395528 (-)
LOC120565409 cunh19orf24 coding upstream 216524 1456573 ~ 1461949 (-)
si:ch211-1a19.3 NA coding upstream 343339 1583388 ~ 1605966 (-)
LOC120565573 NA coding upstream 728136 1968185 ~ 1972613 (-)
LOC120565577 NA coding upstream 894512 2134561 ~ 2163094 (-)
G92409 NA non-coding downstream 29440 1194809 ~ 1199593 (-)
G92389 NA non-coding downstream 36503 1128680 ~ 1192530 (-)
G92382 NA non-coding downstream 75896 1144757 ~ 1153137 (-)
G92384 NA non-coding downstream 85658 1142095 ~ 1143375 (-)
G92393 NA non-coding downstream 115527 1113151 ~ 1113506 (-)
G92419 NA non-coding upstream 73382 1313431 ~ 1313715 (-)
G92422 NA non-coding upstream 85434 1325483 ~ 1331677 (-)
G92429 NA non-coding upstream 135459 1375508 ~ 1402932 (-)
G92430 NA non-coding upstream 157998 1398047 ~ 1439248 (-)
G92433 NA non-coding upstream 198925 1438974 ~ 1521997 (-)
LOC120565934 NA other downstream 99179 1102382 ~ 1129854 (-)
LOC120565586 tmem259,LOC102799979 other downstream 246276 962592 ~ 982757 (-)
G92012 NA other downstream 544514 683959 ~ 684519 (-)
patj patj other downstream 593978 596237 ~ 635055 (-)
LOC120565889 LOC101163152 other downstream 662312 553707 ~ 566721 (-)
dbt NA other upstream 160 1240209 ~ 1270261 (-)
G92415 NA other upstream 35883 1275932 ~ 1523081 (-)
LOC120565407 camk4,LOC104962492,LOC102785978 other upstream 180591 1420640 ~ 1673368 (-)
G92437 NA other upstream 282442 1522491 ~ 1558418 (-)
LOC120565418 NA other upstream 597488 1837537 ~ 1962635 (-)

Expression


Co-expression Network