LOC120565407 (camk4,LOC104962492,LOC102785978)


Basic Information

Item Value
gene id LOC120565407
gene name camk4,LOC104962492,LOC102785978
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 1420640 ~ 1673368 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU124480
AGGAGAAACAGACTCAGAAACCCCACGCCATCAAAGTCCTCAAGAAAACGATCGACAAGAAAATAGTTCGCACAGAAATCGGTGTCCTGCTGCGTCTCTCCCACCCAAACATTatccAACTGAAGGAGATCTTTGAGACGGACACCGACATCGCTCTCGTACTGGAGCTGGTGACAGGAGGAGAGCTGTTTgataggatcgtGGAGAGAGGTTACTACAGCGAGAGAGACGCTGCTCACGTCATCAAACAGATCCTGGAGGCCGTGGCGtatCTCCATGACAACGGCGTTGTGCATCGTGATCTCAAACCGGAGAACCTGCTGTACGCCGACCTGTCGCTGGACGCTCCACTCAAGATCGCCGACTTTGGCCTTTCCAAAATCATCGATGACCAAGTGACCATGAAGACAGTGTGTGGTACGCCGGGGTACTGCGCTCCAGAGATCCTGAGAGGGAACGCTTACGGCCCCGAGGTGGACATGTGGTCGGTGGGAGTCATCCTCTACATCCtGCTGTGTGGGTTCGAGCCCTTCTTTGACCCTCGGGGGA
>TU124483
AGGAGAAACAGACTCAGAAACCCCACGCCATCAAAGTCCTCAAGAAAACGATCGACAAGAAAATAGTTCGCACAGAAATCGGTGTCCTGCTGCGTCTCTCCCACCCAAACATTatccAACTGAAGGAGATCTTTGAGACGGACACCGACATCGCTCTCGTACTGGAGCTGGTGACAGGAGGAGAGCTGTTTgataggatcgtGGAGAGAGGTTACTACAGCGAGAGAGACGCTGCTCACGTCATCAAACAGATCCTGGAGGCCGTGGCGtatCTCCATGACAACGGCGTTGTGCATCGTGATCTCAAACCGGAGAACCTGCTGTACGCCGACCTGTCGCTGGACGCTCCACTCAAGATCGCCGACTTTGGCCTTTCCAAAATCATCGATGACCAAGTGACCATGAAGACAGTGTGTGGTACGCCGGGGTACTGCGCTCCAGAGATCCTGAGAGGGAACGCTTACGGCCCCGAGGTGGACATGTGGTCGGTGGGAGTCATCCTCTACATCCtgtaagatacacacacacacacacacacacacaccccacaccccTCTAAAGTGTCCTCCCTGTCCCCCAGGCTGTGTGGGTTCGAGCCCTTCTCTAAGTGTCCTCCCTGTCCCCCAGGCTGTGTGGGTTCGAGCCCCTCTCTAAGTGTCCTCCCTGTCCCCCAGGCTGTGTGGGTTCGAGCCCCTCTCTAAGTGTCCTCCCTGTCCCCCAGGCTGTGTGGGTTCGAGCCCTTCTCTAAGTGTCCTCCCTGTCCCCCAGGCTGTGTGGGTTCGAGCCCTTCTCTAAGTGTCCTCCCTGTCCCCAGGCTGTGTGGGTTCGAGCCCCTCTCTAAGTGTCCTCCCTGTCCCCCAGGCTGTGTGGGTTCGAGCCCTTCTCTAAGTGTCCTCCCTGTCCCCCAGGCTGTGTGGGTTCGAGCCCCTCTCTAAGTGTCCTCCCTGTCCCCCAGGCTGTGTGGGTTCGAGCCCTTCTTTGACCCTCGGGGGA
>TU124484
TTAAAAACATATGAATTCAACGATTCATAACCAGAGAGAGCTGCGTTCTGATAGGACATCTTCCAGGCGCTGAGAAACCTTTCTAGGGAACGGAAACTGAATCCTAACTCACAGCTGCCTGTGATGTTAgcatgtttagtttagtttagtgtaGAGCTGCAGCTGGCAGATTGTTACCTGTGTCTGGTGAGTGTCTGGATGTCAGCCCGTTCTCACGCTGAACTCCTAAAACACGGGCGCTTTGGGCTGTGGCTGTCAGCGCCAGATACCACGCAAAAATCCCCCTTTACACTCCttccagtttttttgtgattgtccCCAAAagatccttgattatgcggcccGTTTTCTTAAAAACTGCGATGTAATATGAGGGGGATATTCATCCAGTCTTATGCGATGAAacttgcgggaacttgcaaaaaccagtccctccagaaaaacacgatgatgcgatcgcataattcaacgcataagcagccaaagtccgcatattcaaatatggcgcactttcgccgcataaattgcagatttctgcgcaaaatatgcggtgcttgcatgatttcataatccccgcattttcgttacaaaaaagtcccaaaatatatcttagcaggaagttgaaaaatgttgcgtctcttaagttggtatccaatcagaaagctatc
>TU124486
GGAAAagctaaataaaatatgaaataaggAAATTCCCATAAAAATTAAGAATAACAGGGTTCAtatgttttgaaaaaacctggaaaagttatggaatttgaaaaatgcaaattccataACATGCCtagaaaggttttggaaaaatacaaagacccagaaagttttgggaAAGTCATAGAATTTAGAACACAGCATAATATGTGTTTAatttatgaatcccactatgaaccacagacattatcattcatgttatagttaaacCTatgaaaagtcaataaaaagtcatggaaaagtcatgaaaaagtcatggaaaagtcatggaaaagtcatggaaaaagtcatgaaaaagtcatgaaaaagtcacgaaaaagtcatggaacaGTCATGGaacagtcatggaaaagtcatgaaaaagtcttgaaaaagtcatggaacagtcatgaaaaagtcatgaaaaagtcatggaacagtcatgaaaaagtcatgaaaaagtcatggaaaagtcatggaaaagtcatggaacaGTCATGGaacagtcatggaaaagtcatgaaaaaagtcatggaaaagtcacggaaaagtcatggaacagtcatggaaaagtcatgaaaaaagtcatggaaaagtcatggaacaGTCATGAAAAATTCATGGAAAAGTCACGGaacagtcatggaaaagtcatgaaaaaagtcatggaaaagtcacggaaaagtcatggaacagtcatggaaaagtcatgaaaaaagtcatggaaaagtcaaggAAAAATCATGGAAcagtcatgaaaaaagtcatgaaaaaagtcatggaaaaagtcatgaaaaagtcacgAAAAAGTCACGGAAAAGTCATGGaacagtcatggaaaagtcatggaaaagtcatggaaaaaagtcacggaaaagtcatggaacagtcatggaaaagtcatgaaaaagtcttggttaaaatgcgtatgaaccctgcaCACCCCACCCGAAAACATCAAGCTTGAGCTtccagtctctcacacacacacacacacacacacacacacacacacacctctgctgTCACCTCTGCTGGGACCAAACGAACCGGAAACATCCTCAGCTTCTTTTATTCATATAACGTTAAAAACTAGAAACACCGCTGCTACGCTAACGTGCTAACAGTTTGTCGGGTGTGTTTGCAGCCGGGACAGTTTCTGGTTTTCAGAGGAGCCGGGACATTAAAAACATATGAATTCAACGATTCATAACCAGAGAGAGCTGCGTTCTGATAGAACATCTTCCAGGCGCTGAGAAACCTTTCTAGGGAACGGAAACTGAATCCTAACTCACAGCTGCCTGTGATGTTAgcatgtttagtttagtttagtgtaGAGCTGCAGCTGGCAGATTGTTACCTGTGTCTGGTGAGTGTCTGGATGTCAGCCCGTTCTCACGCTGAACTCCTAAAACACGGGCGCTTTGGGCTGTGGCTGTCAGCGCCAGATACCACGCAAAAATCCCCCTTTACACTCCttccagtttttttgtgattgtccCCAAAagatccttgattatgcggcccGTTTTCTTAAAAACTGCGATGTAATATGAGGGGGATATTCATCCAGTCTTATGCGATGAAacttgcgggaacttgcaaaaaccagtccctccagaaaaacacgatgatgcgatcgcataattcaacgcataagcagccaaagtccgcatattcaaatatggcgcactttcgccgcataaattgcagatttctgcgcaaaatatgcggtgcttgcatgatttcataatccccgcattttcgttacaaaaaagtcccaaaatatatcttagcaggaagttgaaaaatgttgcgtctcttaagttggtatccaatcagaaagctatc
>XM_039811214.1
CCTGTCCCCAGGCTGTGTGGGTTCGAGTTCCTCTCTAAGTGTCCTCCCTGTCCCCCAGGCTGTGTGGGTTCGAGCCTTCTCTAAGTGTCCTCCCTGTCCCCCAGGCTGTGTGGGTTCGAGTCCCTCTCTAAGTGTCCTCCCTGTCCCCCAGGCTGTGTGGGTTCGAGCCTGTCTCTAAGTGTCCTCCCTGTCCCCCAGGCTGTGTGGGTTCGAGTTCCTCTCTAAGTGTCCTCCCTGTCCCCCAGGCTGTGTGGGTTCGAGCCTGTCTCTAAGTGTCCTCCCTGTCCCCCAGGCTGTGTGGGTTCGAGCCCTTCTTTGACCCTCGGGGGGACCAGTACATGTACAGCAGGATCCTGAACTGTGACTATGAGTTTGTGTCTCCGTGGTGGGACGATGTGTCTCTCAACGCCAAGGACCTGGTCAGTAAGCTGATCGTCCTGGACCCCCACAAGAGGCTGAACGTGCGCGAGGCGCTGCAGCACCCGTGGGTGCTCGGCAAGGCCGCACGCTTCTCCCACATGGACACAGCCCAGAGGAAGCTGCAGGAGTTCAACGCTCGCCGCAAACTCAAGGCCGCCATGAAGGCCGTGGTGGCGACCAGTCGGATGCATGAGAGCTCGCGGCGCCGCACCGACAGCTGTGACATCCCCGGCTCCGGGACGTCCCGTCAGAGCAGCATGCAGCAGGACCCGCCCCCTGAGACTGCCAGCCCCGAGGCCCCGCCCCCAGACCAGCCAACGCCACCGCCGCAAGACGACCAGTCACAGCCCTCCGACAAATCACAGCCCTCCGACCAATCACAGCCCTCCGACCAACCAGCTCGCGGCCCGTCGTCTCCACGCGGCTCCAAACCGCCCGGCGCGCCCACCCGGCCGCCCCTGCGTGCCGACGGGCCACGCCAGGCGTCCGTCGTGCCCAAACCCGCGGCGCTGCAGCCTCGGCTGCCGCTGAAGAGCCGCTCCGTGGTGGAGCCGGCGTCCTCCAGCGCCGCCGAGGCCCCGCCCCCGAGTCCCAGCAGCCTCAGCAACGGCTTCACGCCACCGCCGCCGCTGGCCGAGCCTGCCAGCACGCCGCGGCGCTGCCAGTGATCAGAGATGCTCCACGCCAACGTGGCGTCGTGACTTTGCGTGAACATACattacacgccactttcctaaagccacgtggcgtgtttaTCTGGACGCATTTTCAGCTCTCCACGTGTCTGTCTACGCTGTATTCAGCGGGCGTAAACatcagggttcatacgttttgaaaagttacggaatttaaaaaaatgcaaattccataacaggcctggaaaggttttggaaacataaaaagaccccgaaagttttggaaaagtcatgaatacagcataataatatgtgattaattaATGTATATTCACATCGTCTTAACCTCAACGTTGTATTTGGGGAGagatattatgaatcccactaaaaaccacagacattatcattcatgtTATAGATAAACCTatgaaaagtcaataaaaagtcatggaaaagtcatgaaaaagtcatggaaaagtcatggaaaa

Function

symbol description
camk4 Enables protein kinase activity. Acts upstream of or within definitive hemopoiesis. Located in cytosol and nucleus. Is expressed in nervous system and pharyngeal arch. Orthologous to human CAMK4 (calcium/calmodulin dependent protein kinase IV).

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU124480 False 549 lncRNA 0.54 8 1659781 1673368
TU124483 False 993 lncRNA 0.58 8 1659781 1673368
TU124484 False 668 lncRNA 0.44 2 1420640 1650064
TU124486 True 1881 lncRNA 0.39 3 1420640 1425506
XM_039811214.1 False 1543 mRNA 0.58 3 1422218 1428731

Neighbor

gene id symbol gene type direction distance location
si:ch211-152f22.4 NA coding downstream 25112 1390241 ~ 1395528 (-)
map1sa NA coding downstream 198222 1189910 ~ 1222418 (-)
palm1a NA coding downstream 234070 1168821 ~ 1186570 (-)
LOC120565851 NA coding downstream 253074 1154148 ~ 1167566 (-)
LOC120564968 NA coding downstream 294746 1124195 ~ 1125894 (-)
LOC120565573 NA coding upstream 294817 1968185 ~ 1972613 (-)
LOC120565577 NA coding upstream 461193 2134561 ~ 2163094 (-)
LOC120565424 NA coding upstream 779951 2453319 ~ 2456640 (-)
LOC120565579 NA coding upstream 819444 2492812 ~ 2526088 (-)
apc2 apc2 coding upstream 861959 2535327 ~ 2600128 (-)
G92429 NA non-coding downstream 17708 1375508 ~ 1402932 (-)
G92422 NA non-coding downstream 88963 1325483 ~ 1331677 (-)
G92419 NA non-coding downstream 106925 1313431 ~ 1313715 (-)
G92383 NA non-coding downstream 119065 1216957 ~ 1301575 (-)
G92408 NA non-coding downstream 182608 1179678 ~ 1238032 (-)
G92459 NA non-coding upstream 21900 1695268 ~ 1752952 (-)
LOC120565415 NA non-coding upstream 27006 1700374 ~ 1701542 (-)
G92460 NA non-coding upstream 37109 1710477 ~ 1804169 (-)
G92466 NA non-coding upstream 42105 1715473 ~ 1772934 (-)
LOC120565417 NA non-coding upstream 142525 1815893 ~ 1824246 (-)
dbt NA other downstream 150379 1240209 ~ 1270261 (-)
lrrc39 lrrc39,LOC102776191 other downstream 180591 1229033 ~ 1240049 (-)
LOC120565934 NA other downstream 290786 1102382 ~ 1129854 (-)
LOC120565586 tmem259,LOC102799979 other downstream 437883 962592 ~ 982757 (-)
G92012 NA other downstream 736121 683959 ~ 684519 (-)
LOC120565418 NA other upstream 164169 1837537 ~ 1962635 (-)
G92495 NA other upstream 214994 1888362 ~ 1890705 (-)
G92445 NA other upstream 220320 1893688 ~ 1913037 (-)
zbtb37 zbtb37,LOC106613586,LOC105011381 other upstream 242915 1916283 ~ 2019954 (-)
s1pr1 s1pr1 other upstream 275045 1948413 ~ 2031057 (-)

Expression


Co-expression Network