RNA id: TU124484



Basic Information


Item Value
RNA id TU124484
length 668
lncRNA type read_through
GC content 0.44
exon number 2
gene id LOC120565407
representative False

Chromosome Information


Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 1420640 ~ 1673368 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


TTAAAAACATATGAATTCAACGATTCATAACCAGAGAGAGCTGCGTTCTGATAGGACATCTTCCAGGCGCTGAGAAACCTTTCTAGGGAACGGAAACTGAATCCTAACTCACAGCTGCCTGTGATGTTAgcatgtttagtttagtttagtgtaGAGCTGCAGCTGGCAGATTGTTACCTGTGTCTGGTGAGTGTCTGGATGTCAGCCCGTTCTCACGCTGAACTCCTAAAACACGGGCGCTTTGGGCTGTGGCTGTCAGCGCCAGATACCACGCAAAAATCCCCCTTTACACTCCttccagtttttttgtgattgtccCCAAAagatccttgattatgcggcccGTTTTCTTAAAAACTGCGATGTAATATGAGGGGGATATTCATCCAGTCTTATGCGATGAAacttgcgggaacttgcaaaaaccagtccctccagaaaaacacgatgatgcgatcgcataattcaacgcataagcagccaaagtccgcatattcaaatatggcgcactttcgccgcataaattgcagatttctgcgcaaaatatgcggtgcttgcatgatttcataatccccgcattttcgttacaaaaaagtcccaaaatatatcttagcaggaagttgaaaaatgttgcgtctcttaagttggtatccaatcagaaagctatc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU124491 lncRNA downstream 17708 1375508 ~ 1402932 (-) True G92429
TU124469 lncRNA downstream 88963 1325483 ~ 1331677 (-) True G92422
TU124465 lncRNA downstream 106925 1313431 ~ 1313715 (-) True G92419
TU124407 lncRNA downstream 177064 1241403 ~ 1243576 (-) False dbt
TU124480 lncRNA upstream 9717 1659781 ~ 1673368 (-) False LOC120565407
TU124483 lncRNA upstream 9717 1659781 ~ 1673368 (-) False LOC120565407
TU124543 lncRNA upstream 45204 1695268 ~ 1752952 (-) True G92459
XR_005640238.1 lncRNA upstream 50310 1700374 ~ 1701542 (-) True LOC120565415
TU124544 lncRNA upstream 60413 1710477 ~ 1804169 (-) True G92460
XM_039812007.1 mRNA downstream 25112 1390241 ~ 1395528 (-) True si:ch211-152f22.4
XM_039811452.1 mRNA downstream 150379 1243546 ~ 1270261 (-) False dbt
XM_039810888.1 mRNA downstream 180591 1229033 ~ 1240049 (-) True lrrc39
XM_039811450.1 mRNA downstream 198222 1189910 ~ 1222418 (-) True map1sa
XM_039812175.1 mRNA downstream 234071 1168821 ~ 1186569 (-) False palm1a
XM_039811219.1 mRNA upstream 187473 1837537 ~ 1857991 (-) True LOC120565418
XM_039811231.1 mRNA upstream 266219 1916283 ~ 2019954 (-) False zbtb37
XM_039811229.1 mRNA upstream 266219 1916283 ~ 2019953 (-) True zbtb37
XM_039811458.1 mRNA upstream 318121 1968185 ~ 1972613 (-) True LOC120565573
XM_039811237.1 mRNA upstream 376323 2026387 ~ 2028279 (-) True s1pr1
TU124456 other downstream 180622 1236067 ~ 1240018 (-) False lrrc39
TU124422 other downstream 290786 1103192 ~ 1129854 (-) False LOC120565934
TU124370 other downstream 437903 975269 ~ 982737 (-) False LOC120565586
TU124371 other downstream 437903 975295 ~ 982737 (-) False LOC120565586
TU123850 other downstream 736121 683959 ~ 684519 (-) True G92012
TU124596 other upstream 238298 1888362 ~ 1890705 (-) False G92495
TU124597 other upstream 238298 1888362 ~ 1890705 (-) False G92495
TU124601 other upstream 238298 1888362 ~ 1890705 (-) False G92495
TU124602 other upstream 238298 1888362 ~ 1890705 (-) False G92495
TU124604 other upstream 238298 1888362 ~ 1890705 (-) True G92495

Expression Profile