RNA id: TU124407


Basic Information

Item Value
RNA id TU124407
length 1766
lncRNA type sense_over
GC content 0.47
exon number 3
gene id dbt
representative False

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 1240209 ~ 1270261 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTCTCTGCCTTCGCTCCGTGTCTCTGTctgaagccccgccccctttctctcctcctcctctctctctgtctctctctctccctctctttctcttctgccttctcctctctctctctgaggctCCTCCCCCTTTCCCTCCTCctcgtctctctgtctctctctctctcttctgtctctctctctctctcttcttgtctgatttctctctctctctctcttctgtctctctcctcgtctgtctctctctctctctctctcttctgtctgtctctctctctctctctctctctctctccgaggCCTTTGTGTTCACTTTCGCTCGCCATCGTTTCTGTTgcctttgagcaaggcaccactgtgaagaggagggggggtcAGCCTAGTCAGCCTGTCAATCATGTTGTTTCCATGAcgacaaaccacacacacacccctctctcACAGACACTTGGTTTGGTTAAAGTCTGACCTTTTTAGTTTGGTGTTTTTCAGTTCAAACTGCCGATTCATTGTGAATGTTTCAGTGAATTGatcataaatcatgtttttattggCGATGATCAGCTGACGTGTGTAGCGGACAGGAAGTGGAGCAGACTCCTGATCAGATGTGACATCACTTCCTTATTTTAACTTCTGAAACACAGACACTAATCTCTGACCTGTGCTGTTGCTAACGGGACTGTGTCTCCGTAGACTACTAACTGTAACCATAGAAGGACAAATATCACAAAGAAAACTACAAAAAGTGGAGTCGGCCAGAACAAAACAGACAGCTGACACACAACTGACACACAACTGACACACAACTGACACACAACTGacagacaagacaaaaaaaCCGACAGAATGACAAAAGGAAGTCAGAAAAAGAGACCataaactagggatgcactgaatccagattttttggGTTTCTGCAGAATcctgaatccagatttttggggttggtCTGAATCCTGAATCCAGATTATTGGGGTTGGTCTGAATCCTGACTcccctggttgagattgtgctgactcctcctcccatcctcagtccatgagcCCAGTAAactcatgaatgaagtaaacagggactgtccttcctttgccgtacctgaagttgctgcattctggctgctgtctggagattccttcgtgcacaactcgtattctttcagatgtttcagaccagatgttgtaacagcggccatgttgtgtgtagtttagggtcctcgccaccaccagaccaatcagcattgagaattgaacatgtagctggacttgaatggccttcttttgactgaaagttctgccaaacaacatgTTCTGCTCTGGTGagcatgtccactttctcacagcctgctgcattgagcGCTCCACCTACATTAACACCTTCCTGTAatcccgtcaaaaagcccaaatattcagcccaatcagAAGCCCAGTCCTggtttcggtgcatccctacactAAACGAGAGACCTCGGATCAGAACCGGTTGGTGTAACGTGTCCGTGTGTCCTCTGTAACATCTGAGCgatgtctgaaagttgtaaatAATACCGCGGTGGGTTTTTGGGGACTCTGGTTCCGGCCCGGCTGCAGACTGTTACAAACTGCGTTGTTTCTGTTACAGAACCGATCCCACTGGTCCAGAACTTGTCCTGCGTTGTGTTTCCGTAGCGACAGACTAACTGTAAAGGTGTATAAAAGAACgtttgggtttttgtatttttgggtGGATCTGAAATTATTCAAGTTATAAAGTTATGTGTGAAATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU124447 lncRNA downstream 3371 1179678 ~ 1238032 (-) True G92408
TU124424 lncRNA downstream 6370 1217265 ~ 1235033 (-) True G92388
TU124448 lncRNA downstream 41810 1194809 ~ 1199593 (-) True G92409
TU124425 lncRNA downstream 48873 1128680 ~ 1192530 (-) True G92389
TU124418 lncRNA downstream 88266 1144757 ~ 1153137 (-) True G92382
TU124465 lncRNA upstream 69855 1313431 ~ 1313715 (-) True G92419
TU124469 lncRNA upstream 81907 1325483 ~ 1331677 (-) True G92422
TU124491 lncRNA upstream 131932 1375508 ~ 1402932 (-) True G92429
TU124494 lncRNA upstream 154471 1398047 ~ 1439248 (-) True G92430
TU124495 lncRNA upstream 154471 1398047 ~ 1439248 (-) False G92430
XM_039810888.1 mRNA downstream 1354 1229033 ~ 1240049 (-) True lrrc39
XM_039811450.1 mRNA downstream 18985 1189910 ~ 1222418 (-) True map1sa
XM_039812173.1 mRNA downstream 54833 1168821 ~ 1186570 (-) True palm1a
XM_039812007.1 mRNA upstream 146665 1390241 ~ 1395528 (-) True si:ch211-152f22.4
XM_039811214.1 mRNA upstream 178642 1422218 ~ 1428731 (-) False LOC120565407
XM_039811217.1 mRNA upstream 212997 1456573 ~ 1461949 (-) True LOC120565409
XM_039811216.1 mRNA upstream 339812 1583388 ~ 1605965 (-) False si:ch211-1a19.3
XM_039811215.1 mRNA upstream 341174 1584750 ~ 1605966 (-) True si:ch211-1a19.3
TU124456 other downstream 1385 1236067 ~ 1240018 (-) False lrrc39
TU124422 other downstream 111549 1103192 ~ 1129854 (-) False LOC120565934
TU124370 other downstream 258666 975269 ~ 982737 (-) False LOC120565586
TU124371 other downstream 258666 975295 ~ 982737 (-) False LOC120565586
TU123850 other downstream 556884 683959 ~ 684519 (-) True G92012
TU124458 other upstream 32356 1275932 ~ 1481460 (-) False G92415
TU124459 other upstream 155402 1398978 ~ 1440293 (-) True G92415
TU124510 other upstream 278915 1522491 ~ 1558418 (-) True G92437
TU124512 other upstream 290085 1533661 ~ 1558418 (-) False G92437
TU124596 other upstream 644786 1888362 ~ 1890705 (-) False G92495

Expression Profile