RNA id: XM_039812173.1


Basic Information

Item Value
RNA id XM_039812173.1
length 1909
RNA type mRNA
GC content 0.54
exon number 10
gene id palm1a
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 1168821 ~ 1186570 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cctccctctctccccccccctctcccccctccggTGGGCgggtctcttttctctctcggATGTATCTCGGATGATTCAGCGGACTGATCTGCGCTCAGACATGGAGGTTAGTGAGTCTCAGCAGGATCGagtgcagctcctctctGAGAAGAGGAAATGGCAGACAGAGATCGAGAACAAGAAGCGTCAACTGGAGGATGACAAGAGAGCTCTGCAGCACCTGaagTCGAAGGCTCTGCGGGAGCGCTGGCTGCTGGACGGAGCGCCCTCTGCTGGACCGGAGCAGGAAGACCTGAGGAGACAGCTGGAGCAGGACGAGACCAGGACCCAGAGCCTGGAGGACAACATCcacagGTTGGAGGAGGAGCTGCTCAGTCTGGAAACTGTGTGTCAGACCATAATATACACTGCtGTGTGCTCAGGATCAGTCAAAGCTGTTGAGCTCAAAGGTCAGCCGGAGCCAGCGGTGGCGCCAGCGGTGGCGCCTCAGATCGCTCCAGcctttgcaaAGGTCAGAGTTCCTAAAAGCCCCCATGTGAACGGAGCGAGAGAGGAAAGCGAAGAGATGAAGAGAGCGATGTACTCTGTGGAGATTAAAGTGGAGCGGGACAGGCTGACGGGGGAGACCCGGGTCCTGTCCACTAACACCACACTTCCTGTTGACTTCTCTCAGCGAGGGGTCAAAGTTTACGAGGACGAGAGGAAAGTGGTCCACGAGATGAACGGAGAAGACGGCGTGCAGCTGCTCAGCGTCTCCGAGGTCGAGGATCTCATCCACAAAGCCGACGAGGCGTCCGTGATGTCGCAGACCGTCGCCACGGTGACGTCTCTCCCGacagccgaggaggaggaggaggaggaggaggaggaggaggaggcgagccCCGAGGAGATCAGGGGTCTGCGGGCCGAGCCGGGCGGCCAGCGTGGCCCGGAGGACGCCAGCGCCGCGGCGCCCCTCACCATGGTGTTCATGGGCTACCAGAGCGTGGAGGACGAGGACGAGACCAAGAAGGTGTTCGGTCTGGTCGGCACGGTGACGGCCGAGCGCGTGCTCCTCGATGACCACGCCGCCAGCGAGGAAACATCGCAGAGCGCCGCGCAGGAAGCTCCGCCTCCAAACGCCTCCGACAAACCTACGGAAACGGCTGCAGCGCCAGTGGGCAACGGGGAGCCAGCGGCCGAGGGAGTTAGGGAAgagaaggaagggaaggaggggaaGGAAGGGAAAGAAGGGCAGGAAGGAgtggaaaggaaggaagggaaggaagggGTGGAGGAGGTGAAGAAGGAGAAGCAGCCGTGTAAGTGCTGCAGCATCATGTGACTAGAGTCAGCGTTTTGATGGTTTGCGACTTGACAAAAACTAATTGACGGGAGACTTGACTTGTGTAAAATGTAACTTCATATATTCGACTTTTTacagcttttgttgttgagGGACTTGTGTTTACTAAGGACTCGACTTGCTTTGGACTCGAGTGAAGCTGCTTCAATTATAATCATCTGAAAAACTAAAAGGACAAAAACTACAGGAACTAAGCTCCACCCACTGCCCTAAGCCCCGCCTCTAACCACATGACATCATTTCCTATTTCTGCTTCTGTTTTTATAAAcctttctttaatttttttctattttctcgAGGCCTTTTTACTTTTGTACTCCCGTATGTTTCCACTTGTCTCCTCGATGCATCTGATTAGCATTAGCTTAACATTAGCTTAGCATTAGCTTAGGCACACAGTCTACcctaacctctctctctctataagCTCCGCGATATGAAACACTGGATTAATTTTAGAGTGAAGTATTTATTTGTTCCTCCTGCAGAGTTTCAGGattctgtttgtctttttttggggttttatgaaagaaaaaagaaataaataaacgtGAGGCGACA

Function

GO: NA

KEGG:

id description
K16519 AKAP2; A-kinase anchor protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU124418 lncRNA downstream 15684 1144757 ~ 1153137 (-) True G92382
TU124420 lncRNA downstream 25446 1142095 ~ 1143375 (-) True G92384
TU124431 lncRNA downstream 55315 1113151 ~ 1113506 (-) True G92393
XR_005640307.1 lncRNA downstream 58506 1109261 ~ 1110315 (-) True LOC120565935
XR_005640306.1 lncRNA downstream 63233 1102382 ~ 1105588 (-) True LOC120565934
TU124448 lncRNA upstream 8239 1194809 ~ 1199593 (-) True G92409
TU124419 lncRNA upstream 30387 1216957 ~ 1301575 (-) True G92383
TU124424 lncRNA upstream 30695 1217265 ~ 1235033 (-) True G92388
TU124411 lncRNA upstream 53639 1240209 ~ 1243576 (-) False dbt
TU124407 lncRNA upstream 54833 1241403 ~ 1243576 (-) False dbt
XM_039811909.1 mRNA downstream 1255 1154148 ~ 1167566 (-) True LOC120565851
XM_039810239.1 mRNA downstream 42927 1124195 ~ 1125894 (-) True LOC120564968
XM_039812067.1 mRNA downstream 56249 1071918 ~ 1112572 (-) True LOC120565933
XM_039811448.1 mRNA downstream 118466 1028132 ~ 1050355 (-) True LOC120565560
XM_039811489.1 mRNA downstream 186064 962592 ~ 982757 (-) True LOC120565586
XM_039811450.1 mRNA upstream 3340 1189910 ~ 1222418 (-) True map1sa
XM_039810888.1 mRNA upstream 42463 1229033 ~ 1240049 (-) True lrrc39
XM_039811452.1 mRNA upstream 56976 1243546 ~ 1270261 (-) False dbt
XM_039812007.1 mRNA upstream 203671 1390241 ~ 1395528 (-) True si:ch211-152f22.4
XM_039811214.1 mRNA upstream 235648 1422218 ~ 1428731 (-) False LOC120565407
TU124422 other downstream 38967 1103192 ~ 1129854 (-) False LOC120565934
TU124370 other downstream 186084 975269 ~ 982737 (-) False LOC120565586
TU124371 other downstream 186084 975295 ~ 982737 (-) False LOC120565586
TU123850 other downstream 484302 683959 ~ 684519 (-) True G92012
TU123830 other downstream 602100 553733 ~ 566721 (-) False LOC120565889
TU124456 other upstream 49497 1236067 ~ 1240018 (-) False lrrc39
TU124458 other upstream 89362 1275932 ~ 1481460 (-) False G92415
TU124459 other upstream 212408 1398978 ~ 1440293 (-) True G92415
TU124510 other upstream 335921 1522491 ~ 1558418 (-) True G92437
TU124512 other upstream 347091 1533661 ~ 1558418 (-) False G92437

Expression Profile