RNA id: XM_039812007.1


Basic Information

Item Value
RNA id XM_039812007.1
length 1664
RNA type mRNA
GC content 0.49
exon number 3
gene id si:ch211-152f22.4
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 1390241 ~ 1395528 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGGAGTTTCCCAGTCAGAGGAGACTTGACAAACACTCAGTCGTCTGCGTATAAACTAACCAAAGAGGACGAACACTAGAACACAAGAAGCTGAAGCATCTCTGAAATGACTCCAGCAAGAACTCTGATCAgacggagagggagaggagagcgAGGAACAACGAGACGGGATCATCTCCGGAGGGGAACAGCTGGAAACCAGGAAATACTAACAACTAAAAGACGCCTGTTGAAGATGATAATATCAACTCTGCAGCCTTTGGAAATCACACAAGATGCTAACTTTCTGGGTTTTGTAAAAGCACTAAGCCCCTCTCAAGAAATTCCTACCAACTCTGAGATGTGCTCGCAGCTTCTCAGCGTCTACgaagacaaagaaaaggagTTGCGATCGACCCTGGCCTCTGCAGATGATATCGTGCTGACATGTGAGTTGTGGTCTTCGAGAGCTGAAGACTCCTATTTGACAGTGGGTTGCCATTTCGTGGATAATAGGGGGAGCCTCAAGTCCTACGTGCTGAAAACTACCAGCCTGTTTGGAGAAGAATCTGCAGCCCACATTATACATGAGCTCTCGGCTGTCATGGAGGCGTGGTGCGTGAAAGGAAAGGTGCACTGTGTTGTCAGAGCGGGCATGCCACAACTCAAAGAAGTTAAAGCAGCATGGACACACATGCCTTGTTTCGCCGACACCTTGAATGTGGTTTTTAAGGATCTTATAAAGGACGAGGAGCTGTCGAATGTTCTCAGAAAGTGTTACAACACTGTCCGGTTCTTAAAGTACGACACCGAAGCCGAGAAGTCTCTCAGAATGATCCAGAACAAGATGAGTCTTGAACAAGGTGAGCTGATCCTGTACTCCGGGGACCGGTGGCTCCCCTGGCTGAACACGCTTCAATCACTCATCAAGCAGAACCGTGCTATGGTGATGGTGTTCGACGAAAGAGGCAAGACAGACTTGATTCTAAACGAAAGCGATAAAGAGAAAATCTAGAACCTGATCTCGGCTCTGGAGCCTCTGAAGAAAGCCACGTCCGCGATGAAAGGAGAAGGGTTCGAGACCATCTCAGCCATGCTGCCGCTGCTGACCAGACTCATGGAGAGTctcagagaagaagagaagaacaacaacaatgttGCTCGTGCATTATTGACAAAATGCAAGAAGAAATTCGGGGACGTCAACAACCACTTTCTGGCTCCGTTCACATTCCTCGACCCGAGATTCAAAAACCAGCTGGGAGAGCGAAACAAGAATCGTGCGGTGGCTCAAATAATGAAGGATCTCACTGCAGGCCTGCCGTCCTCTTCTCATGCTAAACTGAAAAGCCTCCTGAAGAGATACATGGCCTACGGACCTACGGCGCCCACGTCTAACCCTTTGTCCTGGTGGAGGCACACAGGAAAGGAGCAGTTTGGCGAGCTAAGAAAGCTCGCTCTGAAGAAACTCGGAGTCGTCTCCACCGCTGTGCCGTTGCAGAGAGCTTTCTCCGATGCAGGCGATCGCTTCTGCAACCTGAGGAACTCCATCGAGCCAGAAAACCTCAACATGATCCTGTTCCTCAACAGCAACTGGTCCACAACATCTTAAAGACTTTTCACACGGGGAACGACTCTcaggccctattttaacgatctacgTGAAGCGtttggtgcaggtgtgtt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU124469 lncRNA downstream 58564 1325483 ~ 1331677 (-) True G92422
TU124465 lncRNA downstream 76526 1313431 ~ 1313715 (-) True G92419
TU124419 lncRNA downstream 88666 1216957 ~ 1301575 (-) True G92383
TU124411 lncRNA downstream 146665 1240209 ~ 1243576 (-) False dbt
TU124407 lncRNA downstream 146665 1241403 ~ 1243576 (-) False dbt
TU124494 lncRNA upstream 2519 1398047 ~ 1439248 (-) True G92430
TU124495 lncRNA upstream 2519 1398047 ~ 1439248 (-) False G92430
TU124484 lncRNA upstream 25112 1420640 ~ 1650064 (-) False LOC120565407
TU124486 lncRNA upstream 25112 1420640 ~ 1425506 (-) True LOC120565407
TU124504 lncRNA upstream 43446 1438974 ~ 1521997 (-) False G92433
XM_039811452.1 mRNA downstream 119980 1243546 ~ 1270261 (-) False dbt
XM_039810888.1 mRNA downstream 150192 1229033 ~ 1240049 (-) True lrrc39
XM_039811450.1 mRNA downstream 167823 1189910 ~ 1222418 (-) True map1sa
XM_039812173.1 mRNA downstream 203671 1168821 ~ 1186570 (-) True palm1a
XM_039811214.1 mRNA upstream 26690 1422218 ~ 1428731 (-) False LOC120565407
XM_039811217.1 mRNA upstream 61045 1456573 ~ 1461949 (-) True LOC120565409
XM_039811216.1 mRNA upstream 187860 1583388 ~ 1605965 (-) False si:ch211-1a19.3
XM_039811215.1 mRNA upstream 189222 1584750 ~ 1605966 (-) True si:ch211-1a19.3
XM_039811219.1 mRNA upstream 442009 1837537 ~ 1857991 (-) True LOC120565418
TU124456 other downstream 150223 1236067 ~ 1240018 (-) False lrrc39
TU124422 other downstream 260387 1103192 ~ 1129854 (-) False LOC120565934
TU124370 other downstream 407504 975269 ~ 982737 (-) False LOC120565586
TU124371 other downstream 407504 975295 ~ 982737 (-) False LOC120565586
TU123850 other downstream 705722 683959 ~ 684519 (-) True G92012
TU124459 other upstream 3450 1398978 ~ 1440293 (-) True G92415
TU124510 other upstream 126963 1522491 ~ 1558418 (-) True G92437
TU124512 other upstream 138133 1533661 ~ 1558418 (-) False G92437
TU124596 other upstream 492834 1888362 ~ 1890705 (-) False G92495
TU124597 other upstream 492834 1888362 ~ 1890705 (-) False G92495

Expression Profile