RNA id: XM_039811452.1


Basic Information

Item Value
RNA id XM_039811452.1
length 1660
RNA type mRNA
GC content 0.62
exon number 11
gene id dbt
representative False

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 1240209 ~ 1270261 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gaagaagcctgCTGAGCGCTGATTGGCTGCTGGGAGGGGCGTGCGGCTGTGAcgtcagcagcagagagcaaagATGGCGGCAGTGACCAGAGGCTCCTCCGCTGTTCTCAGACGGCTGCTGACTCAGCAGTACCGGCGCCGATGTTTCCGGCTGCAGAGCGTCAGATTTGTCCGAACGGTGCAGCCGCCGGCGGTCAGATGGGACAGaaacatccagatgttgagcAGCAGGACGCTGCACATCGCCAGCGTGAGCCGAGGACCGATCGTCCAGTTCAAACTGTCGGACATCGGAGAGGGAATCATGGAGGTGACGGTGAAGGAGTGgtACGTGAAGGAGGGTGATAAGGTGTCCCAGTTCGACAGTATCTGTGAGGTGCAGAGCGACAAGGCGTCCGTCACCATCACCAGCCGCTACGACGGCGTCATCAAGAGGCTCTACTACGACGTAGACGCCACGGCGCTGGTCGGGAAACCTCTGGTCGACATCGAGACAGAGGCGGGCCCAGCGGTGATCCCGGAGGAGGACGTGGTGGAGACGCCCGCCATGGCGAGAGAAGAACACACCCACCAGGAGATCAAAGGGCTGAAGACGCAGGCCACGCCCGCCGTCAGACGCCTCGCCATCGAGAACAACATCAAACTCAGCGAGGTTGTGGGGACGGGGAGAGACGGACGCATCCTGAAGGAAGACATCCTGAACTTCCTGGCGAAGCAGACGGGCGCCATCATCCCTCCGACTCTGTTCCAGGAGATCCAGACTCCGCCTCCGGCCCCGGCCGCCACGGCAACCGCCCGGCCCGCTACCACCGCGGCCGCCGCCGCCAAACCTCCGCCCGCCACGCCCAGACCCGTCTTCACCGGGAAGGACGTCACCGAGCCGCTCAAAGgTTTCCACAAAGCGATGGTGCGTACGATGACAGCAGCTCTGAAGATTCCTCACTTTGGTTACTGTGACGAGGTGGACCTGAGCCGCCTGGTGGCCCTcaggtcggagctccgctccaCCGCCGAGGCtcggggggtcaaactcagctACATGCCCTTCTTCATCaagGCTGCCTCGCTCGGCCTCCTGCACTTCCCTGTCCTCAACGCGTCGGTGGATGAAGGCTGCCAGAACATCACCTACAAGgcGTCCCATAACATTGGGCTGGCGATGGACACTCTTCAGGGCCTGCTGGTTCCCAACGTGAAGAACGTGCAGCTGCTCAGCGTGTTCGACATCGCCCAGGAGCTGAACCGCCTGCAGGCGCTCGGGGTGGGGGGGCAGCTGGGCACCAGCGAGCTGAGCGGAGGAACCTTCACGCTGTCCAACATCGGCTCCATCGGAGGAACGTACGCCAAACCGGTCATTCTTCCTCCTGAAGTCGCCATCGGAGCTCTGGGGAAAATACAGGTTCTCCCTCGGTTCGATGCCAGTGGTTCCGGTGGTCCGCCCACTTGCAAGGGCCGGCTCAGCCAGATCACCGCATCATCGGACGGCGCCTACCTCATGTGTTCTGGTTCTCCAACCTGTGAGGGAGTACTGGAGAACCCCTGGGTGCATAGCATGCTGGACCTCCAAATAGATTTTACCCATCAGCCCTGGGCGGATAGGAGCCACGCGCCACACGCACCCTTCACTTCCTCTCTGCCTTCGCTCCGTGTCTCTGTctga

Function

GO:

id name namespace
GO:0009081 branched-chain amino acid metabolic process biological_process
GO:0046949 fatty-acyl-CoA biosynthetic process biological_process
GO:0048037 obsolete cofactor binding molecular_function
GO:0043754 dihydrolipoyllysine-residue (2-methylpropanoyl)transferase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU124447 lncRNA downstream 5514 1179678 ~ 1238032 (-) True G92408
TU124424 lncRNA downstream 8513 1217265 ~ 1235033 (-) True G92388
TU124448 lncRNA downstream 43953 1194809 ~ 1199593 (-) True G92409
TU124425 lncRNA downstream 51016 1128680 ~ 1192530 (-) True G92389
TU124418 lncRNA downstream 90409 1144757 ~ 1153137 (-) True G92382
TU124465 lncRNA upstream 43170 1313431 ~ 1313715 (-) True G92419
TU124469 lncRNA upstream 55222 1325483 ~ 1331677 (-) True G92422
TU124491 lncRNA upstream 105247 1375508 ~ 1402932 (-) True G92429
TU124494 lncRNA upstream 127786 1398047 ~ 1439248 (-) True G92430
TU124495 lncRNA upstream 127786 1398047 ~ 1439248 (-) False G92430
XM_039810888.1 mRNA downstream 3497 1229033 ~ 1240049 (-) True lrrc39
XM_039811450.1 mRNA downstream 21128 1189910 ~ 1222418 (-) True map1sa
XM_039812173.1 mRNA downstream 56976 1168821 ~ 1186570 (-) True palm1a
XM_039812174.1 mRNA downstream 56977 1168821 ~ 1186569 (-) False palm1a
XM_039812175.1 mRNA downstream 56977 1168821 ~ 1186569 (-) False palm1a
XM_039812007.1 mRNA upstream 119980 1390241 ~ 1395528 (-) True si:ch211-152f22.4
XM_039811214.1 mRNA upstream 151957 1422218 ~ 1428731 (-) False LOC120565407
XM_039811217.1 mRNA upstream 186312 1456573 ~ 1461949 (-) True LOC120565409
XM_039811216.1 mRNA upstream 313127 1583388 ~ 1605965 (-) False si:ch211-1a19.3
XM_039811215.1 mRNA upstream 314489 1584750 ~ 1605966 (-) True si:ch211-1a19.3
TU124456 other downstream 3528 1236067 ~ 1240018 (-) False lrrc39
TU124422 other downstream 113692 1103192 ~ 1129854 (-) False LOC120565934
TU124370 other downstream 260809 975269 ~ 982737 (-) False LOC120565586
TU124371 other downstream 260809 975295 ~ 982737 (-) False LOC120565586
TU123850 other downstream 559027 683959 ~ 684519 (-) True G92012
TU124458 other upstream 5671 1275932 ~ 1481460 (-) False G92415
TU124459 other upstream 128717 1398978 ~ 1440293 (-) True G92415
TU124510 other upstream 252230 1522491 ~ 1558418 (-) True G92437
TU124512 other upstream 263400 1533661 ~ 1558418 (-) False G92437
TU124596 other upstream 618101 1888362 ~ 1890705 (-) False G92495

Expression Profile