RNA id: TU124601


Basic Information

Item Value
RNA id TU124601
length 1985
RNA type TUCP
GC content 0.50
exon number 2
gene id G92495
representative False

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 1888362 ~ 1890705 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTAAAAGTATTATGAAAAGTTTTATTTGTGAAATCATAAATATTGAAAAAGAAATATGTGCAAAagacatttcacattaaaacaggaagtgacGACAAAAATAAAAGATCTAACACATAATTCATAAAAAACACCCAAACATCTGAtaaaatgtgtgaaaacagaCAGAACCAGTCCGACCAGTAAACCCCCAGACTCCATTTACAAACAGGTTTTAAATGTCACACTACAGATGGAAGAGATCCAGTTAAAACCGGTttgattttaatgtaaaaacatcGTTTCCACACTCAGCACCTTGGACCCACCAGACCAGACACAATCCTCCGGCAGCTTTCAGATGAAATGGGTCTGAACTGCAGCGGTTTTCCTGAATGTTTGGCTCTCGTCTttcacaccagactccatttaaaatagGACAGGTTTTAAAGTCCCCAGCacctaacagacagacagtgtttTGGCGTTTGTCCTAGTCTGCTTTGAGTCAGACCGGCAGAGTGGTTCCataccagactccatttaaaatggGACAGTTTTTAAAATCCTCCGGCAGCTTTCAGATGAAATGAGTCTAAACTGCAGCTCAGGTTTCCTGAATATTTGGCTCTGGTCTTTCTTTACTGAACACACATTggacacaccagactccatttaaaatagGACAGATTTTAAAGTCCCCAGCACCTAACAGGCAGCCAGTGTTTTGGGGTTGGTCCCAGTCCTCTCTGAGTCCGATTACCGGAGTGTTTCCATACCAGACTACTACCAGACTACCTATCTATAAAGTCCTCAGCACCTAACAGACAGCCGGTGTTTTGGTCACTTTGAGACAGACCAGCCGAGTGTTTCGACACCAGACTCACTTTAAAATATGACAATTTCTAAAATCTGCCAGCCGCTTTAAGAAGAAATGAGTAAGAGCAGTTGTTTCCCTGAATGTTCCCTGAAAGCTCCTCATTCCCTACTGAACGCACTTCATACACACAGgagtccatttaaaatgtaaataaatatgagTTTTTTATAGTCACTAGCACCTCTCAGACTGCTGATGTTCTGGTGTTTGTCCCAGACCGTTTCCACACCAAAGTCCATGTAAAAAATAACAGATTTTAACTTCATCAGCACCTTTCAGACAGCGGGGCTTTTCCCACCAGAGTCCATGTAAAAACCAGCGTATTGGTTCTCTGGTTGTGTGTGGCGGCCCAGGTCCAGGATGTGGAGTCAGAAGAGTTTGGGGAGCTGCCTGAGGCGGCTCAGGTCCAGGATGTGGAGTCAGAAGAGTTTGGGGAGCTGTCTGAGGCGGCTCAGGTCCAGGATGTGGAGTCAGAAGAGTTTGGGGAGCTGTCTGAGGCGGCTCAGGTCCAGGATGTGGAGTCAGAAGAGTTTGGGCAGCTGTCTGAGGCGGCTCAGGTCCAGGATGTGGAGTCAGAAGAGTTTGGGGAGCTGCCTGAGGCGGCTCAGGTCCAGGATGTTCCCTACCGATCCCTCCGTCTGGCGGCTGCCGGTCCTGACTGACGCTGGATGCCGGTTGGACCGGTTCTCCTTGTTGGCGCCGTTGGCTTTGTTCCCGCCGGGGTACAGCGGCATTTTGGGCTGCAGGTCGCGGATCAGCTGACTCTGTGGGAGGAACGGCTGGCGaactacttcttcttcttcctcttcgcCGTCCTCTTCCTCGATGAGGCCGTAGCGCCGCATGTACTTCCTGGTGGCCAGGGACATGTTGCTAGGCGACAGCAGGGAGTGGTTGGAGCTGGAGGCGGAGGCGGGGACTGTTTGGGGGGCGTGGCCTCCCAGAGACAGCCGGCTGAGCTGGGAGTCGCTCAGGTAGCGCAGCGCGATGGCGTTGGCCTCCAGACTCAGGTCCACGCTGGCACCGGGGAACAGAGAGCTCGCCGAGGACTCGGACACGCTCAGTCTGGACAGAACAGCCGCTGGGTTGATACCCGCCAGAGTGCTGcaagcacagagagagagag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005640240.1 lncRNA downstream 64116 1815893 ~ 1824246 (-) True LOC120565417
TU124544 lncRNA downstream 84193 1710477 ~ 1804169 (-) True G92460
TU124551 lncRNA downstream 115428 1715473 ~ 1772934 (-) True G92466
TU124552 lncRNA downstream 115428 1723698 ~ 1772934 (-) False G92466
XR_005640238.1 lncRNA downstream 186820 1700374 ~ 1701542 (-) True LOC120565415
TU124609 lncRNA upstream 5968 1896673 ~ 1897047 (-) True G92498
TU124528 lncRNA upstream 7841 1898546 ~ 1914423 (-) True G92447
TU124523 lncRNA upstream 17768 1908473 ~ 1913037 (-) True G92445
TU124524 lncRNA upstream 18533 1909238 ~ 1909489 (-) False G92445
TU124614 lncRNA upstream 35285 1925990 ~ 2016043 (-) True G92501
XM_039811219.1 mRNA downstream 30371 1837537 ~ 1857991 (-) True LOC120565418
XM_039811215.1 mRNA downstream 282396 1584750 ~ 1605966 (-) True si:ch211-1a19.3
XM_039811216.1 mRNA downstream 282397 1583388 ~ 1605965 (-) False si:ch211-1a19.3
XM_039811217.1 mRNA downstream 426413 1456573 ~ 1461949 (-) True LOC120565409
XM_039811214.1 mRNA downstream 459631 1422218 ~ 1428731 (-) False LOC120565407
XM_039811231.1 mRNA upstream 25578 1916283 ~ 2019954 (-) False zbtb37
XM_039811229.1 mRNA upstream 25578 1916283 ~ 2019953 (-) True zbtb37
XM_039811458.1 mRNA upstream 77480 1968185 ~ 1972613 (-) True LOC120565573
XM_039811237.1 mRNA upstream 135682 2026387 ~ 2028279 (-) True s1pr1
XM_039811249.1 mRNA upstream 172961 2063666 ~ 2087124 (-) True slc30a7
TU124510 other downstream 329944 1522491 ~ 1558418 (-) True G92437
TU124512 other downstream 329944 1533661 ~ 1558418 (-) False G92437
TU124458 other downstream 406902 1275932 ~ 1481460 (-) False G92415
TU124459 other downstream 448069 1398978 ~ 1440293 (-) True G92415
TU124456 other downstream 648344 1236067 ~ 1240018 (-) False lrrc39
TU124522 other upstream 2983 1893688 ~ 1913037 (-) False G92445
TU124527 other upstream 31277 1921982 ~ 2019912 (-) False zbtb37
TU124644 other upstream 136426 2027131 ~ 2031057 (-) False s1pr1
TU124656 other upstream 186137 2076842 ~ 2087097 (-) False slc30a7
TU124674 other upstream 397570 2288275 ~ 2307309 (-) True G92535

Expression Profile