RNA id: TU123892


Basic Information

Item Value
RNA id TU123892
length 2880
lncRNA type inter_gene
GC content 0.41
exon number 3
gene id G92039
representative False

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 800509 ~ 808192 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTTCAACTTCACATCACTCAGAAGtccacagaaataaaataataaagacagACGGACGATGTTTCATACACAGATCAAGGGTTAGGGTAACCCTAATATTAGggttaccctaaccctaataacAGTTTAAAGGCTCcaacacaccaacccgacggccgactgTCAGCAggaaagccagtcggactgatcagtctccccgaggtccaaaaactgtctcagaacacaccgaagcgacgctgacttgagcgtacgttctgctcCTGCgagagacgtaatacgtctccataacagcaggtgtcGCTAATCTGATTTGTCactcaaaaaatgaaaaccgtaaATGAGGGAAAATCTCTCTAGACGTGATAATCACAGAGCACGCTGTGGTCAGTccttgttttcatcagagagtggTGATggtagtcaagaaggatcgttgtCATCACTTGCTGAACACAAGGAAATACTACggctagtaataagaagatactggcgttgGCAGCTCTCGGATTCGCTAGTTaagggttagcactccaccaatcacattgctcattgagtccgactgcccactggccaattcaacaagtcaaatcggccaaaattaAAGCTGacagctcctccgactgacgacggcacgggacacactgaacagacttgagtcaccgacctcgccagactgtctgacgGCTGATTATCAGGTCGATGGGTCAGCGCCTTAACTTCACACTTAACGCCTTCAGCAGTATTTCAGTCATCTGTTCTGCTGCTCTGATTCATGATGCATCAGCAACATTTAAAGTGTTTATTATTAACTTTATCATCATTATTAGTCttagtattattagtatttttattattattattattattattattactatttcaGGGCTCCATGTTGGTTTAGTTGCCAGAATTTCTGAAAGGAAACATTGACGGATGTATTTCTAAATTTAAAACACCGAACATTTCTATAATTTCAGTTTAACTTGAAAAACTTTGATTAATTAGTGAAAATCTGCTGAAGAacaaaatattatattaaaagTTAAAGATGCATAAAATACTGACTTATGTTGTAAAATTACTGGATGGATTTATGAAGGAGTTAAATGTTTATAAATTCTGTATTTAATGACTTTGACTTCTGAacactgcttttattttgtgaaCAGGAACAGGAAACAGACGTGAGATTTCACCGCCACGAGTACCGAAAATCAGATGGTTTGGGACGATGTGATTGGCTGCTTTGTCCGTCACATGACTTTAATAAATTCATATTAAACAGACAGTTACTTCGCTCGCTAACCTTCAGGACTGCACTTCCTGCTgcacttcacaataaaagccttccAGAGgaaaagcttttattgtgaagctgCAGCAGGAAGTGGGTCGTTTAACAAAGTTCACAATTAATACACTTCAGAAttaaaggaaacaaaaaataCTTAGTAAAATAAAACGTTCAAGGATAAACAGCATAAAACAAAGATTCAGTCAgtgaaacaaaaaacacaaaatctgtaaacacaaacaggaagtttagtgttattacattattatatcATATATAGATATCATAAGCTGCAAACTCAGACTAAACAACCAGAGTCATACTGGTGTTAAACTGGGATTAAACCACAGTTAAACTGGAGCAACAGTTTAGGTAAAAGTGGACTTAAACTTAGAGTTAAACTGAGTTTAAATGGGGAAAATACGAAGTCAGAACTGCACTAAACTTGGAATGAAACTAGATTTTAATTCCAGATTCAAGTGGAGTTAAGAGTTTAAAGTTACACTGAAGGTATTACAGCTAAACTGGAGATAAAGTGGAGTGTAAATGGTTATTTTCAGccctttaaataaaacaaacataaaacatcaaaagaacATGTTTTCACCTGTTTGACCTCTGCCATGATTTTAACTAACATTTaaagaaccaaaaaaaaaaaagtgccattCAGTCTGTAGAGTCCAGTAGAGTCAGGTAGGGTGTGGTAGAGTCCGGTAGAGTCGTGCAAAGTCTTGTCCAAATAGTAGTTGCTTCCAACCACAGCACGAAGCCAGTTTTACAAACGCCTCTTTTACTACGGTGGTCTACAGGGAAAATCCTTCCTGGATTTTTAGCTGCAATACCGCAAGAGGACACTGCCAGGCTGAGTGCTGTTCCTGGGGTTCCTGCTAGCTAAACAGAGAAAGTGATTCATCTGAACACATCTTAACATTAGCCTGCTTGTGTTGGATGGATGGCACAAATTGTTCCTATTATCTGCGGCCGAGTGTTTACACAGAGGCAGCGTGTTACGGCCGGGTTTCAGGGTAAAACTGCGGAGTGATCAGCGCGATAATACTAATGTTTTTGTTCTGGCAGCTTGAGTCTCCAAGACTTTGCTCACAATGGTGCAACATTGGGAAAGCAGATAGTGTGGTCCAGTAGAGTCCCGTAGAGTCCATTACAGTCCCGTGGAGTCCATTACAGTTCAGTAGAGTCCATTACAGTTCAGTAGAGTCCATTAGAGTCCAGTAGAGTCTGATATAGTCTGGTATATTCCAGGAGACACAGGTTTAAGGGTTAAGACAAGTTCTCTGCTGACTGGAGGCATCAAtcagaggatgaagaagaggaggatgacAACGAAGAGGATTGCGAGCAACACGCCGATAGCACACCACTGGCGACGGTCGCTGGTCATGTGAGACACTTTGGCCAGTTTCTTCATGACGGTGTCCATCTTAGACTGAGTGTTGTCCACCTCATGAGTGAAGTCATCCAACATCCTGCAgggaaaacacaaagacactTAACACATGTGGACAGCAAACAACCAGCAAACAACCAGGAAACAACCAGCAAACAATCAGCAAATACCAGGAAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU123890 lncRNA downstream 14377 786220 ~ 788496 (-) True G92038
TU123887 lncRNA downstream 20296 782360 ~ 782577 (-) True G92037
TU123886 lncRNA downstream 28499 769467 ~ 774374 (-) True G92036
TU123839 lncRNA downstream 176981 625159 ~ 625892 (-) False patj
TU123848 lncRNA downstream 187822 612294 ~ 615051 (-) False patj
TU124364 lncRNA upstream 84944 893136 ~ 893378 (-) True G92347
TU124365 lncRNA upstream 115113 923305 ~ 984047 (-) True G92348
TU124375 lncRNA upstream 199539 1007731 ~ 1008403 (-) True G92354
TU124376 lncRNA upstream 200483 1008675 ~ 1009506 (-) True G92355
XR_005640287.1 lncRNA upstream 252939 1061131 ~ 1065922 (-) False LOC120565781
XM_039811406.1 mRNA downstream 27634 763120 ~ 775239 (-) False LOC120565536
XM_039811405.1 mRNA downstream 27634 763120 ~ 775239 (-) True LOC120565536
XM_039811898.1 mRNA downstream 92660 708034 ~ 710213 (-) False LOC120565842
XM_039811897.1 mRNA downstream 92660 708034 ~ 710213 (-) True LOC120565842
XM_039811899.1 mRNA downstream 95545 705867 ~ 707328 (-) True LOC120565843
XM_039811447.1 mRNA upstream 8388 816580 ~ 827947 (-) True LOC120565559
XM_039811491.1 mRNA upstream 150367 958559 ~ 962464 (-) True LOC120565587
XM_039811489.1 mRNA upstream 154400 962592 ~ 982757 (-) True LOC120565586
XM_039811490.1 mRNA upstream 154417 962609 ~ 982757 (-) False LOC120565586
XM_039811448.1 mRNA upstream 219940 1028132 ~ 1050355 (-) True LOC120565560
TU123850 other downstream 118354 683959 ~ 684519 (-) True G92012
TU123830 other downstream 236152 553733 ~ 566721 (-) False LOC120565889
TU123743 other downstream 530207 178709 ~ 272666 (-) True G91938
TU123744 other downstream 530207 178709 ~ 272666 (-) False G91938
TU123726 other downstream 692678 109660 ~ 110195 (-) True G91929
TU124370 other upstream 167077 975269 ~ 982737 (-) False LOC120565586
TU124371 other upstream 167103 975295 ~ 982737 (-) False LOC120565586
TU124422 other upstream 295000 1103192 ~ 1129854 (-) False LOC120565934
TU124456 other upstream 427875 1236067 ~ 1240018 (-) False lrrc39
TU124458 other upstream 467740 1275932 ~ 1481460 (-) False G92415

Expression Profile