RNA id: XM_039811899.1



Basic Information


Item Value
RNA id XM_039811899.1
length 686
RNA type mRNA
GC content 0.53
exon number 4
gene id LOC120565843
representative True

Chromosome Information


Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 705867 ~ 707328 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


GCCCTATGAGTCTGAAGCCGAACAGAAGAGAGACAAGTCTGAAGCCAAACAGAAGAGAGTCCTCCAAATCTCCTATGCCTAAGGAGAGGCCCTGTGAGTCTCAAGCCGAACAGAAGAGTCCTCCAAACATCCTCTGCCTAAAGAGCGGCCCTGAGTCTGAAGCCAAACAGAAGAGAGACAAGTGTGAAGCCGAACAGAAGAGAGACAAGTCTGAAGCCGAACAGAAGAGAGACAAGTCTGAAGCCGAACAGAAGAGAGACAAGTCTGAAGACGAACAGAAGAGAGACTCATCCAAACATCCTCTCCCTAAAAGTGCCTTTTCAAAACCGATAGGGAAGTGTCCTCTGAAGAGGAAGGGGGCGTCTTCCGACCGAGACAGAACAAGAAGGGAGTTATTTTCGGAGTTGGGCAGCACTCAGGGAGATTAACAAAGACCAGTTgCGAAGGGTCCATCGGAGGACGCAGGTCTGTTTGAGAATGCGGTGGATCTGTCGGTTCAAGTGGAGGCGGAGGATCTGTCACAGGACGCAGGTCTGTTGGGGGATGCCGGGGATCTGTCGGTGCAAGTGGAAGCAGAGGGTCTGTCGCAGGACGCTGGTCTGTTGGAGGATGCAGTGGAGGTGAAGGGTCTGTCCCAAGACAGTTCCGACTCATTTGAACTGCCATGCTGGCAACTAGAGGCTGAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU123839 lncRNA downstream 79975 625159 ~ 625892 (-) False patj
TU123838 lncRNA downstream 80242 599681 ~ 625625 (-) False patj
TU123818 lncRNA downstream 86260 509149 ~ 619607 (-) True G91991
TU123847 lncRNA downstream 90816 610302 ~ 615051 (-) False patj
TU123848 lncRNA downstream 90816 612294 ~ 615051 (-) False patj
TU123886 lncRNA upstream 62139 769467 ~ 774374 (-) True G92036
TU123887 lncRNA upstream 75032 782360 ~ 782577 (-) True G92037
TU123890 lncRNA upstream 78892 786220 ~ 788496 (-) True G92038
TU123891 lncRNA upstream 93181 800509 ~ 808192 (-) True G92039
TU123892 lncRNA upstream 95545 802873 ~ 808192 (-) False G92039
XM_039811443.1 mRNA downstream 70812 596237 ~ 635055 (-) True patj
XM_039811996.1 mRNA downstream 139153 553707 ~ 566714 (-) True LOC120565889
XM_039811442.1 mRNA downstream 156457 542038 ~ 549410 (-) True LOC120565555
XM_039812186.1 mRNA downstream 252739 381933 ~ 453128 (-) False LOC120566001
XM_039811898.1 mRNA upstream 706 708034 ~ 710213 (-) False LOC120565842
XM_039811897.1 mRNA upstream 706 708034 ~ 710213 (-) True LOC120565842
XM_039811406.1 mRNA upstream 55792 763120 ~ 775239 (-) False LOC120565536
XM_039811405.1 mRNA upstream 55792 763120 ~ 775239 (-) True LOC120565536
XM_039811447.1 mRNA upstream 109252 816580 ~ 827947 (-) True LOC120565559
TU123850 other downstream 21348 683959 ~ 684519 (-) True G92012
TU123830 other downstream 139146 553733 ~ 566721 (-) False LOC120565889
TU123743 other downstream 433201 178709 ~ 272666 (-) True G91938
TU123744 other downstream 433201 178709 ~ 272666 (-) False G91938
TU123726 other downstream 595672 109660 ~ 110195 (-) True G91929
TU124370 other upstream 267941 975269 ~ 982737 (-) False LOC120565586
TU124371 other upstream 267967 975295 ~ 982737 (-) False LOC120565586
TU124422 other upstream 395864 1103192 ~ 1129854 (-) False LOC120565934
TU124456 other upstream 528739 1236067 ~ 1240018 (-) False lrrc39
TU124458 other upstream 568604 1275932 ~ 1481460 (-) False G92415

Expression Profile