atg4b (atg4b,atg4a)


Basic Information

Item Value
gene id atg4b
gene name atg4b,atg4a
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 28966406 ~ 28978444 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039811265.1
GTCCCGCCTCTCTCCGAATTCCACAGCAGGACTCTCTTCCCATTGGTCCACCGGGTTGGAATACAGAGAACAACAAACAAGATAGGGTGAAGACCGTCGGGATGGATGCAGCAACCTTGACATACGACACACTTCGCTTTGGAGAGTTTGAAGACTTCCCTGAGACCTCAGAGCCTGTGTGGATCTTGGGGAAAGAATACAATGCACTCACAGAGAGAGATGAGATTTTATCAGATGTCACTTCACGACTGTGGTTCACATACAGAAAAAACTTCCCACCAATTGGTGGGACAGGACCAACATCAGATACAGGATGGGGATGCATGTTACGGTGCGGCCAGATGATCCTAGGCGAGGCCTTGGTGTGTAGACATGTAGGCAGAGACTGGAGATGGGCCAGAGGCCAGAAACAAAGAGAAGAGTACATCAGCATTCTCAACGCCTTCATTGACAAAAAAGACAGCTATTATTCCATCCATCAAATTGCCCAAATGGGAGTTGGAGAGGGAAAGCCTATAGGCCAGTGGTATGGACCGAACACAGTTGCCCAGGTTTTAAAGAAGCTGGCAGTGTTTGACACGTGGAGCAGATTAGTCGTACACGTGGCGATGGACAACACTGTGGTCATCGAGGAGATCAAGCGTCTCTGTATGCCCTGGCTGGACGCGGCAGGAGCCTGTGGCGGAGCGGGCGAGCTCAACGGCTGCCTGGAGGGGGCGTGTGCCCTGGCCGAGGAGGAGACGGCTCTCTGGAAACCTCTGGTCCTGCTCATCCCCCTCAGGCTGGGCCTGAGTGATATAAATGAGGCCTACATCGAAACCCTCAAGCAATGCTTCATGCTGCCTCAGTCCCTGGGTGTTATTGGGGGGAAACCCAACAGTGCCCATTACTTCATTGGTTATGTCGGAGAGGAACTCATCTATTTAGACCCACACACCACGCAGCCTGCAGTGGATCCATGTGAAGATGGCCAGGTCCCTGATGAGACGTACCATTGTCAGCACCCACCCTGCCGCATGCACATCTGTGAATTGGACCCATCCATCGCAGCGGGTTTCTTCTGCAGAACAGAGGACGAGTTTGACGACTGGTGTATGCGCATAAGAAGGCTGTCGTGCAACAGAGGGGGCCTGCCCATGTTTGAACTAGTAGACAGTCAGCCCTCACACATGGTCAGCGTGGATGCCCTTAACCTCACTCCTGACCCTTACTTCGCAGATTTCTCAGACTCGGACAGGTTGGAGCGGTTCTTCGATTCAGAAGATGAAGAGTTTGAGATCCTTTCCCTCTGAGGAACTTATGAACGATTTGCTGTTCTCGACAGTTTGGGAGAGATTCTCGGTCTCTTCTCTGTATCTGAAGGGAAGCCTGAGGGGATGAACATTAACTGGAGACTTCTTGAGCCAGTCCAGCTCCAATGGTGTAGTCAGTGTGTCACACAGCGTTCTTCTCAACACTGCTCTCTGTCTCCTACATTGAGACTGCCTGGTGGAAGCTGTAGCAGGAGCTCAGGATAAATTCTGTATGCACATCTTCACATACATGTTTCCATTTGAGTCTTAACACTTTAAATGTTTATTCTGAAGTGATATGGTGCCTTTCCCTGACTCCATAAGTAAAATTGCCATAACATTTTTATGTTGTATAGAAACACAATGGTTCATGATGCCCATGGCTTATGCGGTTTGTCACTAATAACTCAAGTCTGTAACAGCCTGTAATGAAACCAAATTAAGTCAAATCTGCTGACAAGTTGCATTAATTGTTCATGCAAAGTATCCTTGCCAACTTTTAATTTGAAGAGTATTTATTTAATCAACACGGTATATAGACAGGTGAAAGATCAATACACATGTAtgaggataaaaaaacaaataaagtcaGACTCTGATATTT
>XM_039811266.1
GTCCCGCCTCTCTCCGAATTCCACAGCAGGACTCTCTTCCCATTGGTCCACCGGGTTGGAATACAGAGAACAACAAACAAGATAGGGTGAAGACCGTCGGGATGGATGCAGCAACCTTGACATACGACACACTTCGCTTTGGAGAGTTTGAAGACTTCCCTGAGACCTCAGAGCCTGTGTGGATCTTGGGGAAAGAATACAATGCACTCACAGAGAGAGATGAGATTTTATCAGATGTCACTTCACGACTGTGGTTCACATACAGAAAAAACTTCCCACCAATTGGTGGGACAGGACCAACATCAGATACAGGATGGGGATGCATGTTACGGTGCGGCCAGATGATCCTAGGCGAGGCCTTGGTGTGTAGACATGTAGGCAGAGACTGGAGATGGGCCAGAGGCCAGAAACAAAGAGAAGAGTACATCAGCATTCTCAACGCCTTCATTGACAAAAAAGACAGCTATTATTCCATCCATCAAATTGCCCAAATGGGAGTTGGAGAGGGAAAGCCTATAGGCCAGTGGTATGGACCGAACACAGTTGCCCAGGTTTTAAAGAAGCTGGCAGTGTTTGACACGTGGAGCAGATTAGTCGTACACGTGGCGATGGACAACACTGTGGTCATCGAGGAGATCAAGCGTCTCTGTATGCCCTGGCTGGACGCGGCAGGAGCCTGTGGCGGAGCGGGCGAGCTCAACGGCTGCCTGGAGGGGGCGTGTGCCCTGGCCGAGGAGGAGACGGCTCTCTGGAAACCTCTGGTCCTGCTCATCCCCCTCAGGCTGGGCCTGAGTGATATAAATGAGGCCTACATCGAAACCCTCAAGCAATGCTTCATGCTGCCTCAGTCCCTGGGTGTTATTGGGGGGAAACCCAACAGTGCCCATTACTTCATTGGTTATGTCGGAGAGGAACTCATCTATTTAGACCCACACACCACGCAGCCTGCAGTGGATCCATGTGAAGATGGCCAGGTCCCTGATGAGACGTACCATTGTCAGCACCCACCCTGCCGCATGCACATCTGTGAATTGGACCCATCCATCGCAGCGGGTTTCTTCTGCAGAACAGAGGACGAGTTTGACGACTGGTGTATGCGCATAAGAAGGCTGTCGTGCAACAGAGGGGGCCTGCCCATGTTTGAACTAGTAGACAGTCAGCCCTCACACATGGTCAGCGTGGATGCCCTTAACCTCACTCCTGATTTCTCAGACTCGGACAGGTTGGAGCGGTTCTTCGATTCAGAAGATGAAGAGTTTGAGATCCTTTCCCTCTGAGGAACTTATGAACGATTTGCTGTTCTCGACAGTTTGGGAGAGATTCTCGGTCTCTTCTCTGTATCTGAAGGGAAGCCTGAGGGGATGAACATTAACTGGAGACTTCTTGAGCCAGTCCAGCTCCAATGGTGTAGTCAGTGTGTCACACAGCGTTCTTCTCAACACTGCTCTCTGTCTCCTACATTGAGACTGCCTGGTGGAAGCTGTAGCAGGAGCTCAGGATAAATTCTGTATGCACATCTTCACATACATGTTTCCATTTGAGTCTTAACACTTTAAATGTTTATTCTGAAGTGATATGGTGCCTTTCCCTGACTCCATAAGTAAAATTGCCATAACATTTTTATGTTGTATAGAAACACAATGGTTCATGATGCCCATGGCTTATGCGGTTTGTCACTAATAACTCAAGTCTGTAACAGCCTGTAATGAAACCAAATTAAGTCAAATCTGCTGACAAGTTGCATTAATTGTTCATGCAAAGTATCCTTGCCAACTTTTAATTTGAAGAGTATTTATTTAATCAACACGGTATATAGACAGGTGAAAGATCAATACACATGTAtgaggataaaaaaacaaataaagtcaGACTCTGATATTT
>XR_005640255.1
GTCCCGCCTCTCTCCGAATTCCACAGCAGGACTCTCTTCCCATTGGTCCACCGGGTTGGAATACAGAGAACAACAAACAAGATAGGGTGAAGACCGTCGGGATGGATGCAGCAACCTTGACATACGACACACTTCGCTTTGGAGAGTTTGAAGACTTCCCTGAGACCTCAGAGCCTGTGTGGATCTTGGGGAAAGAATACAATGCACTCACAGAGAGAGATGAGATTTTATCAGATGTCACTTCACGACTGTGGTTCACATACAGAAAAAACTTCCCACCAATTGGTGGGACAGGACCAACATCAGATACAGGATGGGGATGCATGTTACGGTGCGGCCAGATGATCCTAGGCGAGGCCTTGGTGTGTAGACATGTAGGCAGAGACTGGAGATGGGCCAGAGGCCAGAAACAAAGAGAAGAGTACATCAGCATTCTCAACGCCTTCATTGACAAAAAAGACAGCTATTATTCCATCCATCAAATTGCCCAAATGGGAGTTGGAGAGGGAAAGCCTATAGGCCAGTGGTATGGACCGAACACAGTTGCCCAGGTTTTAAAGAAGCTGGCAGTGTTTGACACGTGGAGCAGATTAGTCGTACACGTGGCGATGGACAACACTGTGGTCATCGAGGAGATCAAGCGTCTCTGTATGCCCTGGCTGGACGCGGCAGGAGCCTGTGGCGGAGCGGGCGAGCTCAACGGCTGCCTGGAGGGGGCGTGTGCCCTGGCCGAGGAGGAGACGGCTCTCTGGAAACCTCTGGTCCTGCTCATCCCCCTCAGGCTGGGCCTGAGTGATATAAATGAGGCCTACATCGAAACCCTCAAGCAATGCTTCATGCTGCCTCAGTCCCTGGGTGTTATTGGGGGGAAACCCAACAGTGCCCATTACTTCATTGGTTATGTCGGAGAGGAACTCATCTATTTAGACCCACACACCACGCAGCCTGCAGTGGATCCATGTGAAGATGGCCAGGTCCCTGATGAGACGTACCATTGTCAGCACCCACCCTGCCGCATGCACATCTGTGAATTGGACCCATCCATCGCAGCGAACAGAGGACGAGTTTGACGACTGGTGTATGCGCATAAGAAGGCTGTCGTGCAACAGAGGGGGCCTGCCCATGTTTGAACTAGTAGACAGTCAGCCCTCACACATGGTCAGCGTGGATGCCCTTAACCTCACTCCTGACCCTTACTTCGCAGATTTCTCAGACTCGGACAGGTTGGAGCGGTTCT
>XR_005640256.1
GTCCCGCCTCTCTCCGAATTCCACAGCAGGACTCTCTTCCCATTGGTCCACCGGGTTGGAATACAGAGAACAACAAACAAGATAGGGTGAAGACCGTCGGGATGGATGCAGCAACCTTGACATACGACACACTTCGCTTTGGAGAGTTTGAAGACTTCCCTGAGACCTCAGAGCCTGTGTGGATCTTGGGGAAAGAATACAATGCACTCACAGAGAGAGATGAGATTTTATCAGATGTCACTTCACGACTGTGGTTCACATACAGAAAAAACTTCCCACCAATTGGTGGGACAGGACCAACATCAGATACAGGATGGGGATGCATGTTACGGTGCGGCCAGATGATCCTAGGCGAGGCCTTGGTGTGTAGACATGTAGGCAGAGACTGGAGATGGGCCAGAGGCCAGAAACAAAGAGAAGAGTACATCAGCATTCTCAACGCCTTCATTGACAAAAAAGACAGCTATTATTCCATCCATCAAATTGCCCAAATGGGAGTTGGAGAGGGAAAGCCTATAGGCCAGTGGTATGGACCGAACACAGTTGCCCAGGTTTTAAAGAAGCTGGCAGTGTTTGACACGTGGAGCAGATTAGTCGTACACGTGGCGATGGACAACACTGTGGTCATCGAGGAGATCAAGCGTCTCTGTATGCCCTGGCTGGACGCGGCAGGAGCCTGTGGCGGAGCGGGCGAGCTCAACGGCTGCCTGGAGGGGGCGTGTGCCCTGGCCGAGGAGGAGACGGCTCTCTGGAAACCTCTGGTCCTGCTCATCCCCCTCAGGCTGGGCCTGAGTGATATAAATGAGGCCTACATCGAAACCCTCAAGCAATGCTTCATGCTGCCTCAGTCCCTGGGTGTTATTGGGGGGAAACCCAACAGTGCCCATTACTTCATTGGTTATGTCGGAGAGGAACTCATCTATTTAGACCCACACACCACGCAGCCTGCAGTGGATCCATGTGAAGATGGCCAGGTCCCTGATGAGACGTACCATTGTCAGCACCCACCCTGCCGCATGCACATCTGTGAATTGGACCCATCCATCGCAGCGAACAGAGGACGAGTTTGACGACTGGTGTATGCGCATAAGAAGGCTGTCGTGCAACAGAGGGGGCCTGCCCATGTTTGAACTAGTAGACAGTCAGCCCTCACACATGGTCAGCGTGGATGCCCTTAACCTCACTCCTGATTTCTCAGACTCGGACAGGTTGGAGCGGTTCTTCGATTCAGAAGATGA

Function

symbol description
atg4b Predicted to enable cysteine-type endopeptidase activity. Predicted to act upstream of or within autophagy; protein transport; and proteolysis. Predicted to be located in cytoplasm. Is expressed in brain; liver; and muscle. Orthologous to human ATG4B (autophagy related 4B cysteine peptidase).
atg4a Predicted to enable cysteine-type endopeptidase activity. Predicted to act upstream of or within autophagy; protein transport; and proteolysis. Predicted to be located in cytoplasm. Orthologous to human ATG4A (autophagy related 4A cysteine peptidase).

NR:

description
cysteine protease ATG4B-like

GO: NA

KEGG:

id description
K08342 ATG4; cysteine protease ATG4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039811265.1 True 1896 mRNA 0.48 13 28966406 28978444
XM_039811266.1 False 1881 mRNA 0.48 13 28966406 28978444
XR_005640255.1 False 1237 transcript 0.53 13 28967051 28978444
XR_005640256.1 False 1238 transcript 0.53 13 28967035 28978444

Neighbor

gene id symbol gene type direction distance location
angptl1a angptl1 coding downstream 112819 28836582 ~ 28853587 (-)
zyg11 zyg11b coding downstream 194073 28755051 ~ 28772333 (-)
LOC120564929 NA coding downstream 234241 28725253 ~ 28732165 (-)
LOC120566211 LOC104943485,LOC101073631,LOC103354190,LOC102792080 coding downstream 260956 28687446 ~ 28705450 (-)
LOC120565212 LOC103354179 coding downstream 306277 28649875 ~ 28660129 (-)
boka bok,LOC103374845 coding upstream 1329 28979773 ~ 28991591 (-)
farp2 farp2 coding upstream 23080 29001524 ~ 29039529 (-)
LOC120564876 NA coding upstream 718146 29696590 ~ 29703769 (-)
LOC120565715 kyat3,LOC102191994,LOC100694678,LOC102313413 coding upstream 728236 29706680 ~ 29730876 (-)
barhl2 barhl2,LOC102777546 coding upstream 990681 29969125 ~ 29972945 (-)
G99205 NA non-coding downstream 6606 28959172 ~ 28959800 (-)
G99197 NA non-coding downstream 7281 28956469 ~ 28959125 (-)
G99204 LOC106574201,LOC101065544 non-coding downstream 10560 28953302 ~ 28955846 (-)
G99165 NA non-coding downstream 99608 28866593 ~ 28866798 (-)
G99161 NA non-coding downstream 108848 28856269 ~ 28857558 (-)
G99239 NA non-coding upstream 178183 29156627 ~ 29157096 (-)
G99240 NA non-coding upstream 211370 29189814 ~ 29190089 (-)
G99241 NA non-coding upstream 211698 29190142 ~ 29190900 (-)
LOC120566009 NA non-coding upstream 279376 29257820 ~ 29264467 (-)
G99275 lmo4,LOC103026253,LOC107593176 non-coding upstream 451776 29430220 ~ 29432914 (-)
LOC120565123 ipo13,LOC103354180,LOC102296374,LOC100704490,LOC101476741,LOC104925999,LOC102781747,LOC102197282 other downstream 329327 28601332 ~ 28637079 (-)
G98938 serbp1,LOC102303841,LOC104930792,LOC105932454,LOC103463733,LOC106917776 other downstream 696681 28199362 ~ 28269725 (-)
G98781 NA other downstream 1138099 27825065 ~ 27828307 (-)
G98777 NA other downstream 1235849 27729681 ~ 27730557 (-)
LOC120565230 nr2c2ap,LOC102799158 other downstream 1347520 27615442 ~ 27618886 (-)
LOC120566080 LOC103369405 other upstream 493128 29471572 ~ 29573160 (-)
G99324 lrrc8c other upstream 774781 29753225 ~ 29758214 (-)
znf644b LOC102209721 other upstream 1061479 30039923 ~ 30078079 (-)
tgfbr3 tgfbr3 other upstream 1128325 30106769 ~ 30191850 (-)
G99587 NA other upstream 1905831 30884275 ~ 30885171 (-)

Expression


Co-expression Network