yjefn3 (yjefn3)


Basic Information

Item Value
gene id yjefn3
gene name yjefn3
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 27401601 ~ 27453398 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039811803.1
CTGAGCCAATCCGCCTGCGAGCACCATGCCTCCTGATTCTTAATCGGCTGGTTTTCCCTGTGCCCTGTGGGCGAAGCTGATGCACAGAGCCAGCTGGCTTTATTAGAGAATGCGCCGGGGCCACAGcgggaaagagacagagaggagaggcagAGATATAGAGGCAATAttcagagtgtgtgtttgtgttgtgtgtgtgtgtgtgtgtgtgtgtgtggagcagcCAGTTATTACCTTCCAGCTTCTGAACCAATCAAGAGCCaccacagagagagatagagagggaggaagcCCATTTACATTCTCAGTCTATTCCCAGGCACAGAGGTAGACAGTGTGCTTATTGAATCTGAGTCCGAGAGAAGGAACGGAAGTGGCACAGCTCATTCTTTCTCATATTTGCCGAGTCGTGCAGGGTGAACACAGATGGACAAGATGAACCACAGCTCAGCTGAGGCAGAGGCTGAAACCATAGAACCACTGCGTTACCTCAGTAAGGGGGAGGCGGCAGCTATCGAGACAGAGCTACTGAGGGACTACAGGTTTGGACAACAGCAGTTGATAGAGATTTGGGGACAAGCATGTGCCCACGCCATCACTAAGGCCTACCCTCTCAGCTCTCTATCAAAGAAGCAGCCAACAGTGCTGGTGATCTGTGGTCCGGATCAAAACGGCTCCATTGGCTTGGTGTGTGCCCGGCACCTGCGCATATATGAATATGAGCCTACCATCTACCACCCTAAACGCTCCTCTCAAAGTCTACACCAGGACTTTACAGTTCAGTGTGAGAAGATGGACATCCCTTTCCTCTCCTATCTTCCCACAGAGGTACAGCTCATAAACGATGCCTACAACCTAGTGATTGATGCCATGTTGGGCCCAGATGCAGACTGTGCCAACATTAAGGAGCCCTACCCTGGCATTCTGGTCACCCTGAAACAAGTCAAGATCCCCATTGCCAGTGTGGATGTGCCCTCAGGATGGGACGTAGAAGAACCAAGTCAGGATGGCATTAACCCAGAAGTTCTCATCTCACTCACAGCACCAAAGAAGTGCGCCATGAGTTTCTCTGGGAAGCATTTTTTGGCCGGACGCTTCCTGCCCTATGACATCCAGAAAAAATACGAGCTTAACCTCCCAGACTACCCTGGCACAGACTGTCTTATAGAATTGTAACACATGGGAAACATAAGAGCCAGTGTGGCCGCtgctcattttcaaaaaacgtACAGTTGATCTATtctctttgttttgtattttatagATTTAATGTTAACAGCTCAGTTGTGTAGATCAGGCTACACCTTAGCCAAATATGCTGTTGAGCTAAAGTAAAAGGATAATATTTAGAAGCTGTGGTTTGAGTCTTTTTAGGGAATGGCATGAGGAGTTTTTGTGTCAGTCTACTTGTAAAAGCTGTAGCATTACACTGTTTTCTGATTACTTTGCAAAAGACAGAAATATCTTTTTCCACAGTCAGAAAAGAGAGGTGATATTTCTATGATGCCAACCActggaaagttttttttcttcacaaaatGTTCATGTTCTAATGGTCTTATGTTTAACTTTCTACTGAAGTGTGCTGCTGAGATGAGATGTTGTGTAGGTTGGCCATTTCCAATTTTCCATTTATGTGTTTTAGGTTTGTTTTGTCAGCCTGCACTTCGGCATTACTTTTGTTTCAGTTACTTCATtagctgttaaaaaaaaggccCAGACAGTTGTTgtctaataaaaaaaacgtcCTTTTTAAGGATTCAA

Function

symbol description
yjefn3 Predicted to enable NADHX epimerase activity. Involved in hematopoietic stem cell proliferation and regulation of Notch signaling pathway. Acts upstream of or within several processes, including membrane raft distribution; negative regulation of angiogenesis; and regulation of cholesterol efflux. Predicted to be active in mitochondrion. Is expressed in somite. Orthologous to human YJEFN3 (YjeF N-terminal domain containing 3).

NR:

description
PREDICTED: yjeF N-terminal domain-containing protein 3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039811803.1 True 1764 mRNA 0.46 6 27401601 27453398

Neighbor

gene id symbol gene type direction distance location
si:ch211-212d10.1 NA coding downstream 51229 27345522 ~ 27350372 (-)
LOC120566144 NA coding downstream 62752 27336259 ~ 27338849 (-)
LOC120566145 NA coding downstream 68243 27324806 ~ 27333358 (-)
LOC120566142 NA coding downstream 129348 27269841 ~ 27272253 (-)
LOC120565723 NA coding downstream 147965 27251438 ~ 27253636 (-)
borcs8 borcs8 coding upstream 154237 27607635 ~ 27613325 (-)
hapln4 hapln4 coding upstream 402269 27855667 ~ 27864994 (-)
tm6sf2 tm6sf2,LOC103370966,LOC101073477 coding upstream 425917 27879315 ~ 27891985 (-)
polr2eb polr2e,polr2eb,LOC107669821 coding upstream 564738 28018136 ~ 28021719 (-)
LOC120564867 LOC105932459,LOC100697758,LOC105903927,LOC103463721,LOC108427173,LOC107095311,LOC103376755,LOC102218510 coding upstream 649088 28102486 ~ 28112239 (-)
G98678 NA non-coding downstream 827 27399659 ~ 27400774 (-)
G98677 NA non-coding downstream 2256 27398664 ~ 27399345 (-)
G98662 NA non-coding downstream 4648 27396691 ~ 27396953 (-)
G98661 NA non-coding downstream 5724 27395564 ~ 27395877 (-)
G98659 NA non-coding downstream 7268 27394044 ~ 27394333 (-)
G98699 slc25a42,LOC100693853,LOC102776412 non-coding upstream 62724 27516122 ~ 27520338 (-)
G98732 NA non-coding upstream 74755 27528153 ~ 27567744 (-)
LOC120565760 NA non-coding upstream 232509 27685907 ~ 27687810 (-)
G98773 ncan,LOC102799902 non-coding upstream 259735 27713133 ~ 27713358 (-)
G98775 NA non-coding upstream 272206 27725604 ~ 27725830 (-)
cilp2 cilp2 other downstream 5215 27376711 ~ 27396386 (-)
G98612 atp5d other downstream 310003 27090234 ~ 27091598 (-)
unc13a unc13a other downstream 974660 26380010 ~ 26426941 (-)
G98429 NA other downstream 1103106 26295947 ~ 26298495 (-)
LOC120565253 NA other downstream 1368210 26030593 ~ 26033391 (-)
gatad2ab gatad2a,LOC103371089 other upstream 3349 27456747 ~ 27491957 (-)
mau2 mau2,LOC106573592 other upstream 41909 27495307 ~ 27512380 (-)
mef2b mef2b,LOC104918762 other upstream 133042 27586440 ~ 27607306 (-)
LOC120565230 nr2c2ap,LOC102799158 other upstream 162044 27615442 ~ 27618886 (-)
G98777 NA other upstream 276283 27729681 ~ 27730557 (-)

Expression


Co-expression Network