hapln4 (hapln4)


Basic Information

Item Value
gene id hapln4
gene name hapln4
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 27855667 ~ 27864994 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039812485.1
GGACCCACAAACACCGGTGGTTCCCCTGCAGTGCGAGAGATCAGCGATGGGACtagggacagagagggaggagagagaaagagagggagggagggagagaggtgaGCGCTGCTGCAGAACAACATTTAGCCGGACTGAGGAGTTAAACGGCGGGCAGCAGCACATCTGCTCCATCCAGGCATTAATCCTGTTGTGATAGCCATGTTCTCAAAGCAGCTGTGGCCTCTGGCCTTTGGGAAAATGTCCTTTGTGGTTTTCATCCTGACTTCTGCCCTCTCAGTGACTCCCCTGCTGTCTGACATAGACAAGGGACGGAGAAAGGTGGTGCATGTGCTCGAGGATGACACTGGTGCGGTGATTGTGCAGACAGCTCCTGGTAAAGTGGTGACACATCGCGGGGGCTCCATCACTCTGCCCTGCAGATTCCACCATGAGCCGGAGAACACCGATCCTGCTCGCATTCGGATTAAATGGACCAAAGTGACTGATGCACTGCAGTTTGAGGATGTCTTTGTTGCACTTGGAAGGCAGCAGCGTGTGTTTGGATCGTACAAAGGCCGTGTGTTTTTGGAGCAGGCAGGCCCAGGCGACGCCTCAGTGATCATCCAAAATGTCACACTGGAGGACTACGGACGCTTTGAGTGCGAAGTCACTAATGACATGGAAGACGATACAGGATTTGTCAACCTCGACCTAGAAGGAGTGGTGTTTCCCTACTACCCCCGTGAGGGGCGCTATAAGCTCAACTACCATGAGGGGGAGGATGCCTGCAAACAGCAGGACGCCATTCTGGCTTCTCACTCTCAACTGCACAAGGCCTGGCTGGAAGGACTAGACTGGTGTAATGCTGGATGGCTGGAGGATGGCTCAGTCCAGTACCCTATCTCTCATCCCAGAGACCAGTGCGGCCGCAAGGACACCCCCGCTGGCGTCCGTAACTATGGCTACAGGCACAAAGAGGATGAGCGCTACGATGCTTTCTGTTTTACTTCCAAGCTCAATGGCAAAGTGTACTTCCTCAAACGCTTCAAGAAGGTGAACTATGCGGAGGCGGTGAAGGCTTGCATTCGAGATGGCTCAGCTGTGGCCAAAGTGGGTCAGCTGTACGCTGCATGGAAGTTCCAGCTCCTGGACCGCTGTGAAGCCGGCTGGCTGGAGGATGGCAGCATCCGTTACCCCATAGTCAACCCCCGTTCTCGCTGTGGAGGATCCCAGCCAGGCGTCCGACACCTGGGATTCCCTGATAAAAAATTCCGCCTCTATGGGGTCTACTGTTTCCGCAGAAACGAGGATGAAACAGCAGGTGGTACTGAAACGACAAAAAGCCCCACAAATAGTATGACAAGGAGAAAGAGCAGCCGCAGCATCCCCGTGAATGCTACCAGTGTGATTTAAAGTGTAGAGATTGAGAGCAAGAGGGGGGGATGCAATTTAAATTTGACAGTAACAACTGTCGCCTAGCAGCCGACTCCATTCATCGCTTTTAAAGTAAAACACTTACAGACAAGATGTACTCATTTGCAGATTTGCCAGAGAGAAGAAGCGAGGCTGTATAAAATTAAGGGTGACATCTTTATTAGGCTGATGTTCCTTCCATCTCCAGTCAGTCAATCATCTTAAGGAGTATGTTAGCACTTCTGTCGCTGGAAAACTGTGAGGTTAAACAACAGCTTGATCATTACTCAGGCACACATCAGATCAGATGCAATGAATATCCTTGTTTacgtgtgtgggtgggtgtcaTATCTCTGCCCCCTGCTGTGGCCCCTGAGCTCTGAGCTCCATTCTGAGCCAGAATCCCAGTGCCAGGGTGAAAAGATCCATTACTGTGTGAGACGGGATGATCTGCCCGACTGTACTTTTCGTTTAATTGCCTGTATCCGGGTGCCATGTTTGGTTAGCAACACTCTGGCACAATGTGAGTCATTTTTCTCATTAACTAAGACTTGGCAATATCATCATCAGAGCTGCACAAGTAGTGAATATTGCACTAGCTCTAAAAAGATTTCCACTTTAAATACATAGAGCTTTATTTTGTGATAGCATCTTAGCTTAGACTGAAGCAAGCATGTATTGATTGGCTAAGAGTAGTTGCTGAGGCTGAACAAGCAGAAATACAAAGCTACGATAATTGCTATTTCCCGTAAGCTACCTGGGCCACCAGTTGCACTATAAATGTTACAAGCAGCAACCTTTATTACAGAGTATGTTTGCCACTATACAGAATggatatgaaaaaataaaagtcttgaAATTGTTG

Function

symbol description
hapln4 Predicted to enable hyaluronic acid binding activity. Predicted to be involved in central nervous system development and skeletal system development. Predicted to act upstream of or within cell adhesion. Predicted to be located in extracellular region. Predicted to be active in extracellular matrix. Orthologous to human HAPLN4 (hyaluronan and proteoglycan link protein 4).

NR:

description
hyaluronan and proteoglycan link protein 4

GO:

id name namespace
GO:0007155 cell adhesion biological_process
GO:0005540 hyaluronic acid binding molecular_function

KEGG:

id description
K06853 HAPLN4; hyaluronan and proteoglycan link protein 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039812485.1 True 2260 mRNA 0.49 7 27855667 27864994

Neighbor

gene id symbol gene type direction distance location
borcs8 borcs8 coding downstream 242342 27607635 ~ 27613325 (-)
yjefn3 yjefn3 coding downstream 402269 27401601 ~ 27453398 (-)
si:ch211-212d10.1 NA coding downstream 505295 27345522 ~ 27350372 (-)
LOC120566144 NA coding downstream 516818 27336259 ~ 27338849 (-)
LOC120566145 NA coding downstream 522309 27324806 ~ 27333358 (-)
tm6sf2 tm6sf2,LOC103370966,LOC101073477 coding upstream 14321 27879315 ~ 27891985 (-)
polr2eb polr2e,polr2eb,LOC107669821 coding upstream 153142 28018136 ~ 28021719 (-)
LOC120564867 LOC105932459,LOC100697758,LOC105903927,LOC103463721,LOC108427173,LOC107095311,LOC103376755,LOC102218510 coding upstream 237492 28102486 ~ 28112239 (-)
fsd1 fsd1,LOC102776272 coding upstream 262287 28127281 ~ 28137246 (-)
scamp4 scamp4,LOC108230855 coding upstream 306792 28171786 ~ 28177428 (-)
G98780 NA non-coding downstream 39081 27815756 ~ 27816586 (-)
G98776 ncan,LOC102799902 non-coding downstream 127002 27728434 ~ 27728665 (-)
G98775 NA non-coding downstream 129837 27725604 ~ 27725830 (-)
G98773 ncan,LOC102799902 non-coding downstream 142309 27713133 ~ 27713358 (-)
LOC120565760 NA non-coding downstream 167857 27685907 ~ 27687810 (-)
G98819 tjp3 non-coding upstream 116593 27981587 ~ 27982524 (-)
G98852 NA non-coding upstream 160709 28025703 ~ 28027240 (-)
G98903 NA non-coding upstream 223455 28088449 ~ 28090583 (-)
G98908 NA non-coding upstream 232297 28097291 ~ 28101329 (-)
LOC120564868 NA non-coding upstream 249570 28114564 ~ 28119361 (-)
G98781 NA other downstream 27360 27825065 ~ 27828307 (-)
G98777 NA other downstream 125110 27729681 ~ 27730557 (-)
LOC120565230 nr2c2ap,LOC102799158 other downstream 236781 27615442 ~ 27618886 (-)
mef2b mef2b,LOC104918762 other downstream 248361 27586440 ~ 27607306 (-)
mau2 mau2,LOC106573592 other downstream 343287 27495307 ~ 27512380 (-)
G98938 serbp1,LOC102303841,LOC104930792,LOC105932454,LOC103463733,LOC106917776 other upstream 334368 28199362 ~ 28269725 (-)
LOC120565123 ipo13,LOC103354180,LOC102296374,LOC100704490,LOC101476741,LOC104925999,LOC102781747,LOC102197282 other upstream 736338 28601332 ~ 28637079 (-)
atg4b atg4b,atg4a other upstream 1101412 28966406 ~ 28978444 (-)
LOC120566080 LOC103369405 other upstream 1606578 29471572 ~ 29573160 (-)
G99324 lrrc8c other upstream 1888231 29753225 ~ 29758214 (-)

Expression


Co-expression Network