fsd1 (fsd1,LOC102776272)


Basic Information

Item Value
gene id fsd1
gene name fsd1,LOC102776272
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 28127281 ~ 28137246 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039810101.1
ACCAGCTCCGGCGtgccaataaataaaaaagcggCGGACGAAGGAGAAATACCGGCGGTGTTTGCGGCTCGTGCGGCGCCGGTGCAGCTGAGCGGCGAGATGGGAGACCAGAAGGAGTCTCTGCGTAAGATCACCCACACGCTGGCCATGAAGAATGAGGAGATTTCAAACTTTGTCTGCACTCTCAAACAGAGCCTCGACAACTTGGAGGCGAACTCCAGCCGAGTCCAGGAGGACCTGGAGTCTGAGTTCACCTCTCTCCACTCTGTTCTGGACGAGATGAAGGAAAACATGGTGACACGCATCAAACAGGAGAGAGCCAGCCGCACATATGAGCTACAGAGTCAGCTGAGTGCCTGCTCCAAAGCCCTGGAGAGTTCAGAGGAGCTGCTGGAGCTGGCCAATCAGACGCTCTGCTCCTCTGCGACAGACGGTTTCAATCAGGCGGCCAAAGACATTAAGGATAGCGTGACAATGGCTCCAGCCTTTCGCCTCTCCCTGAAGGCTAAAGCCAGTGACAACATGAGTCACTTGATGGTGGATTTCAGCCAGGAGAGGGGGATGTTGCAGGGCCTCAAGTTTCTCCCAGTTCCAGCCACTCCAGAGATCCAGGTCTCAGAGTGCCAGGTCTGCGACAACACGGTGACTGTAGTTTGGACCTTACCGGAGCCCGACAGCAAGATAGACCACTACATACTGGAGCATCGACGCACAAACCACGAGGGTCCGCCGCGCATCAGAGAGGACTACCCGTGGATGGTTCTAGAGGGGATACGAGAGATGGAGCACACACTCACCGGTCTGCGCTTTGACACGCGGTTCATGACTTTCAGAGTGAGAGCGTGTAACAAGGCCGTTGCAGGAGAGTTCTCTGAGCCGGTCACACTAGAAACCCACGCCTTCACCTTCAAACTGGACGCTGCTTCGTCCCACCAGAACCTGAAGGTGGAGGACTTGAGTGTGGAGTGGGACAGCTGTGGAGGAAAGATACAGGACATCCGCAAAGAAAAGACCCGAACCAACTCCCCGATGCACTCTCCAGCCAGGTCAGCCCTGATGTCACCTAAGAGAGCGCCGACAGCCCGGCCCGGCAGAGACCGATTTACAGCAGAGTCCTACACAGTGCTGGCTGATACGATGATCGACGCTGGCCAACAGTACTGGGAGGTGCGGTTCGACAAGGAGAGCAAAGCCTTCGCTGTGGGTGTAGCCCTGCGGAGCCTGGGAAAATTCGACCAGTTGGGGAAAAGTAGCGCTTCGTGGTGCATCCATCTGAACAACTGGCTGCAGCAGAGCCTCACAGCAAAGCACAACAACAAGGCTCGAACACTGGACTGTGCCATCCCAAACACTATAGGAGTCTACGTCAACTATGACGAAGGTGTTCTGTCTTTCTACAACTCCAAAACTAAACAGCTGATGCACACCTTTAAAACCAAGTTCCAGCAGCCAATAATACCAGCTTTCATGGTGTGGAACGGCAGTTTTTCAGTACTGACGGGCCTACAGGTTCCCAGTTTGGTGCAAAGCGGCCAGAGGAAGAACAGCGGCACCAGCAGCTCCAACGCCAGCCTCACCTAGACCCATCCACTCAGCTCTGCTCCACCACAGCCACCGCTGCAGAACATCTGCCTCTGCCCTGGCTGCAGTCCAAGCCATACCATGCAAGAGTTACATCACTGGAGTATGATGGTCTAGCCTGTTCTGGTGTCTGTGTTGCATACCAACAAAAAATGCGTTTGGGGAACAAGTGTGTCATCTGCGCTGTCAGTGACAgaactcttcagatgtatgaCTCCGGCTATTGTTGTGGTTGTTGAGTGGGACGCATTAGTCTTACTAGTTTTTCTTCTCTCTACACATGTCATTTAGCACTGTCCCACTGCTGCTAGAGCAAAGATTTAGCGCTGGCCGCTGCCCTCCCTTCCTTGCCATTACCAAAACTGTCAGTCGTACTGTCAACGCAGCCAGCTGCAGGTGCAGGGTCGAGGCCTGTCCTGGTCAAGGCCTGTCCTGTCTGCTTTCTCCGTGTGCCTTCCTTCTCATTTCCAAATTGATAGGCCAGATCGGGTGATCCGTACCAACATTTTCTCcctatttcaatttaaaaaaacaatgtattgtGTCCGTGTCATTATAACCTGGTTGTAACGTAGCTTATTGGTAAATGATCACCTACTGAATCTGCCCTCTACCTACAGTATCAACCAACCTATTTAACCCAAATAACAACCTGCTCCTAGACAATGCTCAGTTCATTAAATCAGGATTTATTCAACTCTACTTTGCCATGAACTAATGGATAATAAGAACAACACATATCATGGATGTTGTATTTCTTGCCAAGGCACGCAGACTTAATAGTGTTTACTGCATTTCACTTCTTGTAGACGGGTCCCACACTTTGCGTGCAAGATCATTAAGCCTCCTGCTAAGGTTTTGTTAGTTTTAAATCAGAGTCAGTGTTTGCTGTAGAGCCAGGCTCTGTGCAGACATTTTAGAAGGGAGTTTTTAATCAGTGTACCTCCACGTAGAGGTAGGTCATCAGATATGGCTGGATTTTTGGAAATGGCTGTACTGTATTCATTCTATTCACCTGACTGCACCCTCATGCttgtttgtacagtatgtgtgtgtctataccTACAGTAATAACACCACTTTAATTGCTAAAGAGGAATCCCATTACGAGTAGTGGACCGTCTGTAGTCCAAATATAACCAATAGCTAGCAAGTAGCCTCAGCTAACAAATTGTATTATGAGTTTTATCCAGGTTTGGAGTCCACCTGGGTGAGAGAGAACACAAGTGATAAACTCTGGAAACTGATGTTATGAAGTCCTTATTTGTGCACAGCCCGACCTCTTGAGTAGCGTCTGTGTCCTAAGTTACACACGGTAACAGTTTTGCTTCGCCATGTTGCTCCCTCTGTATGCATCTCATGAATAACTGTAGCCTGCAATGCTTTAAAGAAGCTGAGATTAATGTTAACTTTATTTTACATGCTGACTGATAATGTCACAATTTTATtgtaaataattacattttttccacTATAGTGTATCAGTCATTGAGGTAATAAAGGAGCGAGAGAA
>XM_039810102.1
TGTACAAAGGAAGGAGGGGGACAAGCTGCAGAATTGGGGAGTTTGTGGATGCGGTACGGAGTCGTATTCCCCAGTGACGTTTTATATTTGAATCCGTGTTTTTCCGGTTGAAGGAGTCTCTGCGTAAGATCACCCACACGCTGGCCATGAAGAATGAGGAGATTTCAAACTTTGTCTGCACTCTCAAACAGAGCCTCGACAACTTGGAGGCGAACTCCAGCCGAGTCCAGGAGGACCTGGAGTCTGAGTTCACCTCTCTCCACTCTGTTCTGGACGAGATGAAGGAAAACATGGTGACACGCATCAAACAGGAGAGAGCCAGCCGCACATATGAGCTACAGAGTCAGCTGAGTGCCTGCTCCAAAGCCCTGGAGAGTTCAGAGGAGCTGCTGGAGCTGGCCAATCAGACGCTCTGCTCCTCTGCGACAGACGGTTTCAATCAGGCGGCCAAAGACATTAAGGATAGCGTGACAATGGCTCCAGCCTTTCGCCTCTCCCTGAAGGCTAAAGCCAGTGACAACATGAGTCACTTGATGGTGGATTTCAGCCAGGAGAGGGGGATGTTGCAGGGCCTCAAGTTTCTCCCAGTTCCAGCCACTCCAGAGATCCAGGTCTCAGAGTGCCAGGTCTGCGACAACACGGTGACTGTAGTTTGGACCTTACCGGAGCCCGACAGCAAGATAGACCACTACATACTGGAGCATCGACGCACAAACCACGAGGGTCCGCCGCGCATCAGAGAGGACTACCCGTGGATGGTTCTAGAGGGGATACGAGAGATGGAGCACACACTCACCGGTCTGCGCTTTGACACGCGGTTCATGACTTTCAGAGTGAGAGCGTGTAACAAGGCCGTTGCAGGAGAGTTCTCTGAGCCGGTCACACTAGAAACCCACGCCTTCACCTTCAAACTGGACGCTGCTTCGTCCCACCAGAACCTGAAGGTGGAGGACTTGAGTGTGGAGTGGGACAGCTGTGGAGGAAAGATACAGGACATCCGCAAAGAAAAGACCCGAACCAACTCCCCGATGCACTCTCCAGCCAGGTCAGCCCTGATGTCACCTAAGAGAGCGCCGACAGCCCGGCCCGGCAGAGACCGATTTACAGCAGAGTCCTACACAGTGCTGGCTGATACGATGATCGACGCTGGCCAACAGTACTGGGAGGTGCGGTTCGACAAGGAGAGCAAAGCCTTCGCTGTGGGTGTAGCCCTGCGGAGCCTGGGAAAATTCGACCAGTTGGGGAAAAGTAGCGCTTCGTGGTGCATCCATCTGAACAACTGGCTGCAGCAGAGCCTCACAGCAAAGCACAACAACAAGGCTCGAACACTGGACTGTGCCATCCCAAACACTATAGGAGTCTACGTCAACTATGACGAAGGTGTTCTGTCTTTCTACAACTCCAAAACTAAACAGCTGATGCACACCTTTAAAACCAAGTTCCAGCAGCCAATAATACCAGCTTTCATGGTGTGGAACGGCAGTTTTTCAGTACTGACGGGCCTACAGGTTCCCAGTTTGGTGCAAAGCGGCCAGAGGAAGAACAGCGGCACCAGCAGCTCCAACGCCAGCCTCACCTAGACCCATCCACTCAGCTCTGCTCCACCACAGCCACCGCTGCAGAACATCTGCCTCTGCCCTGGCTGCAGTCCAAGCCATACCATGCAAGAGTTACATCACTGGAGTATGATGGTCTAGCCTGTTCTGGTGTCTGTGTTGCATACCAACAAAAAATGCGTTTGGGGAACAAGTGTGTCATCTGCGCTGTCAGTGACAgaactcttcagatgtatgaCTCCGGCTATTGTTGTGGTTGTTGAGTGGGACGCATTAGTCTTACTAGTTTTTCTTCTCTCTACACATGTCATTTAGCACTGTCCCACTGCTGCTAGAGCAAAGATTTAGCGCTGGCCGCTGCCCTCCCTTCCTTGCCATTACCAAAACTGTCAGTCGTACTGTCAACGCAGCCAGCTGCAGGTGCAGGGTCGAGGCCTGTCCTGGTCAAGGCCTGTCCTGTCTGCTTTCTCCGTGTGCCTTCCTTCTCATTTCCAAATTGATAGGCCAGATCGGGTGATCCGTACCAACATTTTCTCcctatttcaatttaaaaaaacaatgtattgtGTCCGTGTCATTATAACCTGGTTGTAACGTAGCTTATTGGTAAATGATCACCTACTGAATCTGCCCTCTACCTACAGTATCAACCAACCTATTTAACCCAAATAACAACCTGCTCCTAGACAATGCTCAGTTCATTAAATCAGGATTTATTCAACTCTACTTTGCCATGAACTAATGGATAATAAGAACAACACATATCATGGATGTTGTATTTCTTGCCAAGGCACGCAGACTTAATAGTGTTTACTGCATTTCACTTCTTGTAGACGGGTCCCACACTTTGCGTGCAAGATCATTAAGCCTCCTGCTAAGGTTTTGTTAGTTTTAAATCAGAGTCAGTGTTTGCTGTAGAGCCAGGCTCTGTGCAGACATTTTAGAAGGGAGTTTTTAATCAGTGTACCTCCACGTAGAGGTAGGTCATCAGATATGGCTGGATTTTTGGAAATGGCTGTACTGTATTCATTCTATTCACCTGACTGCACCCTCATGCttgtttgtacagtatgtgtgtgtctataccTACAGTAATAACACCACTTTAATTGCTAAAGAGGAATCCCATTACGAGTAGTGGACCGTCTGTAGTCCAAATATAACCAATAGCTAGCAAGTAGCCTCAGCTAACAAATTGTATTATGAGTTTTATCCAGGTTTGGAGTCCACCTGGGTGAGAGAGAACACAAGTGATAAACTCTGGAAACTGATGTTATGAAGTCCTTATTTGTGCACAGCCCGACCTCTTGAGTAGCGTCTGTGTCCTAAGTTACACACGGTAACAGTTTTGCTTCGCCATGTTGCTCCCTCTGTATGCATCTCATGAATAACTGTAGCCTGCAATGCTTTAAAGAAGCTGAGATTAATGTTAACTTTATTTTACATGCTGACTGATAATGTCACAATTTTATtgtaaataattacattttttccacTATAGTGTATCAGTCATTGAGGTAATAAAGGAGCGAGAGAA

Function

symbol description
fsd1 Acts upstream of or within Notch signaling pathway and cilium assembly. Predicted to be located in several cellular components, including cleavage furrow; microtubule cytoskeleton; and nucleus. Orthologous to human FSD1 (fibronectin type III and SPRY domain containing 1).

NR:

description
PREDICTED: fibronectin type III and SPRY domain-containing protein 1

GO:

id name namespace
GO:0005622 intracellular anatomical structure cellular_component

KEGG:

id description
K24489 FSD1; fibronectin type III and SPRY domain-containing protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039810101.1 True 3094 mRNA 0.49 13 28127281 28137246
XM_039810102.1 False 3093 mRNA 0.49 13 28127281 28137068

Neighbor

gene id symbol gene type direction distance location
LOC120564867 LOC105932459,LOC100697758,LOC105903927,LOC103463721,LOC108427173,LOC107095311,LOC103376755,LOC102218510 coding downstream 15042 28102486 ~ 28112239 (-)
polr2eb polr2e,polr2eb,LOC107669821 coding downstream 105562 28018136 ~ 28021719 (-)
tm6sf2 tm6sf2,LOC103370966,LOC101073477 coding downstream 235296 27879315 ~ 27891985 (-)
hapln4 hapln4 coding downstream 262287 27855667 ~ 27864994 (-)
borcs8 borcs8 coding downstream 513956 27607635 ~ 27613325 (-)
scamp4 scamp4,LOC108230855 coding upstream 34540 28171786 ~ 28177428 (-)
ubxn6 ubxn6,LOC102799301 coding upstream 59719 28196965 ~ 28204422 (-)
il12rb2 NA coding upstream 138408 28275654 ~ 28289033 (-)
il23r NA coding upstream 158621 28295867 ~ 28307231 (-)
LOC120565125 NA coding upstream 180984 28318230 ~ 28345843 (-)
LOC120564868 NA non-coding downstream 7920 28114564 ~ 28119361 (-)
G98908 NA non-coding downstream 25952 28097291 ~ 28101329 (-)
G98903 NA non-coding downstream 36698 28088449 ~ 28090583 (-)
G98852 NA non-coding downstream 100041 28025703 ~ 28027240 (-)
G98819 tjp3 non-coding downstream 144757 27981587 ~ 27982524 (-)
G98962 NA non-coding upstream 136834 28274080 ~ 28275430 (-)
G99130 NA non-coding upstream 607522 28744768 ~ 28745193 (-)
G99134 NA non-coding upstream 611856 28749102 ~ 28751800 (-)
G99161 NA non-coding upstream 719023 28856269 ~ 28857558 (-)
G99165 NA non-coding upstream 729347 28866593 ~ 28866798 (-)
G98781 NA other downstream 298974 27825065 ~ 27828307 (-)
G98777 NA other downstream 396724 27729681 ~ 27730557 (-)
LOC120565230 nr2c2ap,LOC102799158 other downstream 508395 27615442 ~ 27618886 (-)
mef2b mef2b,LOC104918762 other downstream 519975 27586440 ~ 27607306 (-)
mau2 mau2,LOC106573592 other downstream 614901 27495307 ~ 27512380 (-)
G98938 serbp1,LOC102303841,LOC104930792,LOC105932454,LOC103463733,LOC106917776 other upstream 62116 28199362 ~ 28269725 (-)
LOC120565123 ipo13,LOC103354180,LOC102296374,LOC100704490,LOC101476741,LOC104925999,LOC102781747,LOC102197282 other upstream 464086 28601332 ~ 28637079 (-)
atg4b atg4b,atg4a other upstream 829160 28966406 ~ 28978444 (-)
LOC120566080 LOC103369405 other upstream 1334326 29471572 ~ 29573160 (-)
G99324 lrrc8c other upstream 1615979 29753225 ~ 29758214 (-)

Expression


Co-expression Network