scamp4 (scamp4,LOC108230855)


Basic Information

Item Value
gene id scamp4
gene name scamp4,LOC108230855
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 28171786 ~ 28177428 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039812121.1
gagggagtgggacttcttcctatattagaaattctttgataGGGTCGAGAAAGCGCATCCTGAAAGATTCTTGCTGTTGTCGACGGTAACGTGAGGAGATAAACGCTATCCCGGAAAGAATTGGGATTTCAAAATGGCagAAAGGGTGAATAACTTTCCTCCACTGCCTCAGTTCATGAGAATAAAGCCATGCTTTTACCACAACATTGAAGAGGAAATTCCTGCACCCCACCAGCAGTTGGTTCGCAGAGTCTACACACTTTGGATGATGTATTCTGGCACACTGTGCATAAATGTGATCTCCTGTATTGCTTGGTGGGCTGGGGGTGGAAATGCCACAAACTTCGGCTTTTCCCTACTCTGGCTCATCCTCTTCAGCCCGTGCAGTTACACCTGCTGGTTCAGACCACTCTACAAAGCCTTTAGGGCTGATAGCTCGTTCAACTTCATGgccttcttcttcatcttcttccttCAGTGTGTCTTGGCCCTCATCCAGACTATAGGTATCTCTGGTTGGGGAACATGCGGCTGGATTGCAACAGTGATGTTTTTCAGCACAAATGTGGGCTCCGCTATAGTGATGCTTATCACAACTCTGCTCTTCACTGTGGTGACTGCTTTAATGGCACTGGTTCTCATTAAGGTGCACAGAATGTACCGTGGCGGCGGCGGTAGTTTGGAGCGCGCTCAGGAAGAGTGGAGCACCGGGTTGTGGAAGAGTGCACCAGTGAGGGAAGCAGGGTTTAACGCTGTTGCCCAGGGCCCAAGCTTGCCCCAGTACCCTGCCGCAGTGCCCAGCTATCCCGACAACAGTCACTGGTGATAGCGGAGAGTCGCCTCTAGATGGAGACAGATAGCTGGTCGTTTCTGTGGTGCACAAGAACGCACTTCAAAAGCACCAGCATCTCTCTCTTACATCACAAAATGcatagaaatgttttttttgaatGAGAGGATTGGATTGCtatgaaaaaaatgtgtttccaCTAAAGCTCATTACTACACTTGTCGTAGAGGGTTATCTACAAACTATGCCATTCCATTTCAACTTTTGTTTACATATAGtttattaaaaatgaataaGAGAGAGAACTACAAATTTTATGCTCTAAAGTCTTGCGACTATGCACGTGGAAACGCGAAGAGAGTGAACTGTTTCAGGATAGCAGTATGTGAAGGACGTGTGCCTTATGGATAGAATGCTAGAAACCGTAGTGTACTGAAGAacagggtgttttttttctttcgcaACAAGAGAACGTCTGCAAACTGCATGATTTTTAATCTGGTGGAATTCTTTTCTGTGTATgagttgtttatttttaatacgCTGTGCTTGGAATTTCCATGCTTGCCTGCTTCGGCTGTACTTTCTTGAAATGCGCCTTAATACTACTCACAGATTTtgtatgagaaaaatatcttGCTTGACTTTAGCCTTaacaaatgctgtttttttgttaaactgGACTTATGCTTCAATGAAGCAACATGTGGAAACATTTTTCAAGTTGTTGTGTTGGTGCGTAATCCTCCTCTGTGATTTCTCACTGAGCACTGATGTGCCAAAAACACTTCAGCCTCTTTCCATTATTTTTGAAACTGGAAAAAGTCACACCCAAAGTATCGCGTTGTACTCAGTTTCTGTAGTTCCAAAGCTACACTGTTTGCTTTTAGTAGTCAGCGCCCGGCCCTGAAAGAACCTTATCTGCTGTTGTCGATGTTTTAGTCCCTTTTACTTTCCCACAGATAGATTGAATTTCTGTGTTTGGTGACTGCCGTGTGCTTGCATGCAGCCTATCATGGGAGTGGGACTAAACAGGATTCTCTTATTTCAAATGAACTGACCTCATGTAACCAATACAAACAACTCAACTGGCTGGCTGAAAGATTTACTGCAAATGGATCAGCGGTGAAGTGAAATATTGCATTAGAGTAGTCACAGTGTGTTTAAAACATGACTGATATTCAAAGTGtgaactaatttaatgtcattCCAACAAACTTTGGGAAATAATCTTATTAAACCCATTGAATGTGGCTTTTTAATGCAGGTAATCTACTGTAGCAGCCCAAATTTTACTTTTGGCTTAATGATCCAAAAAGTCTATATGAAGTATATAAGCACCGAGCGGCAGTAAAAGCTGCTTCACCGgttgatttattttcattttcttgttaCAAAAGTGTCCTTCATGGCCAACTGCCAAGAttattatttagatttttctctGTTATTTGATAAGTGACCAGATAAAATGGATAGAAGTTGAAGTAACCTTCAAATATTGCAACATTTCAATAAATACTATTATTCCCaa
>XM_039812122.1
cgagggagtgggacttcttcctatattagaaattctttgataGGGTCGAGAAAGCGCATCCTGAAAGATTCTTGCTGTTGTCGACGGTAACGTGAGGAGATAAACGCTATCCCGAAAGGGTGAATAACTTTCCTCCACTGCCTCAGTTCATGAGAATAAAGCCATGCTTTTACCACAACATTGAAGAGGAAATTCCTGCACCCCACCAGCAGTTGGTTCGCAGAGTCTACACACTTTGGATGATGTATTCTGGCACACTGTGCATAAATGTGATCTCCTGTATTGCTTGGTGGGCTGGGGGTGGAAATGCCACAAACTTCGGCTTTTCCCTACTCTGGCTCATCCTCTTCAGCCCGTGCAGTTACACCTGCTGGTTCAGACCACTCTACAAAGCCTTTAGGGCTGATAGCTCGTTCAACTTCATGgccttcttcttcatcttcttccttCAGTGTGTCTTGGCCCTCATCCAGACTATAGGTATCTCTGGTTGGGGAACATGCGGCTGGATTGCAACAGTGATGTTTTTCAGCACAAATGTGGGCTCCGCTATAGTGATGCTTATCACAACTCTGCTCTTCACTGTGGTGACTGCTTTAATGGCACTGGTTCTCATTAAGGTGCACAGAATGTACCGTGGCGGCGGCGGTAGTTTGGAGCGCGCTCAGGAAGAGTGGAGCACCGGGTTGTGGAAGAGTGCACCAGTGAGGGAAGCAGGGTTTAACGCTGTTGCCCAGGGCCCAAGCTTGCCCCAGTACCCTGCCGCAGTGCCCAGCTATCCCGACAACAGTCACTGGTGATAGCGGAGAGTCGCCTCTAGATGGAGACAGATAGCTGGTCGTTTCTGTGGTGCACAAGAACGCACTTCAAAAGCACCAGCATCTCTCTCTTACATCACAAAATGcatagaaatgttttttttgaatGAGAGGATTGGATTGCtatgaaaaaaatgtgtttccaCTAAAGCTCATTACTACACTTGTCGTAGAGGGTTATCTACAAACTATGCCATTCCATTTCAACTTTTGTTTACATATAGtttattaaaaatgaataaGAGAGAGAACTACAAATTTTATGCTCTAAAGTCTTGCGACTATGCACGTGGAAACGCGAAGAGAGTGAACTGTTTCAGGATAGCAGTATGTGAAGGACGTGTGCCTTATGGATAGAATGCTAGAAACCGTAGTGTACTGAAGAacagggtgttttttttctttcgcaACAAGAGAACGTCTGCAAACTGCATGATTTTTAATCTGGTGGAATTCTTTTCTGTGTATgagttgtttatttttaatacgCTGTGCTTGGAATTTCCATGCTTGCCTGCTTCGGCTGTACTTTCTTGAAATGCGCCTTAATACTACTCACAGATTTtgtatgagaaaaatatcttGCTTGACTTTAGCCTTaacaaatgctgtttttttgttaaactgGACTTATGCTTCAATGAAGCAACATGTGGAAACATTTTTCAAGTTGTTGTGTTGGTGCGTAATCCTCCTCTGTGATTTCTCACTGAGCACTGATGTGCCAAAAACACTTCAGCCTCTTTCCATTATTTTTGAAACTGGAAAAAGTCACACCCAAAGTATCGCGTTGTACTCAGTTTCTGTAGTTCCAAAGCTACACTGTTTGCTTTTAGTAGTCAGCGCCCGGCCCTGAAAGAACCTTATCTGCTGTTGTCGATGTTTTAGTCCCTTTTACTTTCCCACAGATAGATTGAATTTCTGTGTTTGGTGACTGCCGTGTGCTTGCATGCAGCCTATCATGGGAGTGGGACTAAACAGGATTCTCTTATTTCAAATGAACTGACCTCATGTAACCAATACAAACAACTCAACTGGCTGGCTGAAAGATTTACTGCAAATGGATCAGCGGTGAAGTGAAATATTGCATTAGAGTAGTCACAGTGTGTTTAAAACATGACTGATATTCAAAGTGtgaactaatttaatgtcattCCAACAAACTTTGGGAAATAATCTTATTAAACCCATTGAATGTGGCTTTTTAATGCAGGTAATCTACTGTAGCAGCCCAAATTTTACTTTTGGCTTAATGATCCAAAAAGTCTATATGAAGTATATAAGCACCGAGCGGCAGTAAAAGCTGCTTCACCGgttgatttattttcattttcttgttaCAAAAGTGTCCTTCATGGCCAACTGCCAAGAttattatttagatttttctctGTTATTTGATAAGTGACCAGATAAAATGGATAGAAGTTGAAGTAACCTTCAAATATTGCAACATTTCAATAAATACTATTATTCCCaa

Function

symbol description
scamp4 Predicted to be involved in protein transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in recycling endosome membrane and trans-Golgi network membrane. Orthologous to human SCAMP4 (secretory carrier membrane protein 4).

NR:

description
PREDICTED: secretory carrier-associated membrane protein 4

GO:

id name namespace
GO:0015031 protein transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K19995 SCAMP; secretory carrier-associated membrane protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039812121.1 True 2324 mRNA 0.42 7 28171786 28177427
XM_039812122.1 False 2298 mRNA 0.42 6 28171786 28177428

Neighbor

gene id symbol gene type direction distance location
fsd1 fsd1,LOC102776272 coding downstream 34540 28127281 ~ 28137246 (-)
LOC120564867 LOC105932459,LOC100697758,LOC105903927,LOC103463721,LOC108427173,LOC107095311,LOC103376755,LOC102218510 coding downstream 59547 28102486 ~ 28112239 (-)
polr2eb polr2e,polr2eb,LOC107669821 coding downstream 150067 28018136 ~ 28021719 (-)
tm6sf2 tm6sf2,LOC103370966,LOC101073477 coding downstream 279801 27879315 ~ 27891985 (-)
hapln4 hapln4 coding downstream 306792 27855667 ~ 27864994 (-)
ubxn6 ubxn6,LOC102799301 coding upstream 19537 28196965 ~ 28204422 (-)
il12rb2 NA coding upstream 98226 28275654 ~ 28289033 (-)
il23r NA coding upstream 118439 28295867 ~ 28307231 (-)
LOC120565125 NA coding upstream 140802 28318230 ~ 28345843 (-)
LOC120565131 LOC101157528 coding upstream 292234 28469662 ~ 28474558 (-)
LOC120564868 NA non-coding downstream 52425 28114564 ~ 28119361 (-)
G98908 NA non-coding downstream 70457 28097291 ~ 28101329 (-)
G98903 NA non-coding downstream 81203 28088449 ~ 28090583 (-)
G98852 NA non-coding downstream 144546 28025703 ~ 28027240 (-)
G98819 tjp3 non-coding downstream 189262 27981587 ~ 27982524 (-)
G98962 NA non-coding upstream 96652 28274080 ~ 28275430 (-)
G99130 NA non-coding upstream 567340 28744768 ~ 28745193 (-)
G99134 NA non-coding upstream 571674 28749102 ~ 28751800 (-)
G99161 NA non-coding upstream 678841 28856269 ~ 28857558 (-)
G99165 NA non-coding upstream 689165 28866593 ~ 28866798 (-)
G98781 NA other downstream 343479 27825065 ~ 27828307 (-)
G98777 NA other downstream 441229 27729681 ~ 27730557 (-)
LOC120565230 nr2c2ap,LOC102799158 other downstream 552900 27615442 ~ 27618886 (-)
mef2b mef2b,LOC104918762 other downstream 564480 27586440 ~ 27607306 (-)
mau2 mau2,LOC106573592 other downstream 659406 27495307 ~ 27512380 (-)
G98938 serbp1,LOC102303841,LOC104930792,LOC105932454,LOC103463733,LOC106917776 other upstream 21934 28199362 ~ 28269725 (-)
LOC120565123 ipo13,LOC103354180,LOC102296374,LOC100704490,LOC101476741,LOC104925999,LOC102781747,LOC102197282 other upstream 423904 28601332 ~ 28637079 (-)
atg4b atg4b,atg4a other upstream 788978 28966406 ~ 28978444 (-)
LOC120566080 LOC103369405 other upstream 1294144 29471572 ~ 29573160 (-)
G99324 lrrc8c other upstream 1575797 29753225 ~ 29758214 (-)

Expression


Co-expression Network