G126463 (nalcn)


Basic Information

Item Value
gene id G126463
gene name nalcn
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 23399891 ~ 23400386 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU170149
GGCTGCGAAGGGTTGTCTGGGTTGTTAGCATTGTGGTCTTCACTTGGCAAGGTGGTCTCTATGCTGGGGGGGTTAAGGAAGCGGCTCAACTCCTGCTGCTGGCTTTCTCTCAGGCTGTGGATGATGCTACAcgactgctgctgcttCGCCCGGATGCGTTTGAGGCATTTCTTGAGCCACATGCGTATGGTCTGTTTGGCAACCTCTTCTTCAATGGTGTACTCCAACTGTTCCCTGGCCAACAGCTCCTCCAGCTGGAGAGACTTTCTAATGTCCACTGAGCGATATGACAGCATGctgtttgacacacacacacacacacacacacacacacacacacacacacacacacacacac

Function

symbol description
nalcn Predicted to enable cation channel activity. Predicted to act upstream of or within ion transport and transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in central nervous system. Orthologous to human NALCN (sodium leak channel, non-selective).

NR:

description
PREDICTED: sodium leak channel non-selective protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU170149 True 358 lncRNA 0.53 2 23399891 23400386

Neighbor

gene id symbol gene type direction distance location
zic2a zic2 coding upstream 152231 23243632 ~ 23247660 (+)
clybl clybl coding upstream 177650 23159965 ~ 23222241 (+)
klf12b klf12 coding upstream 439137 22914201 ~ 22960754 (+)
tbc1d4 tbc1d4 coding upstream 512503 22856950 ~ 22887388 (+)
commd6 commd6,LOC102792157 coding upstream 544348 22850941 ~ 22855543 (+)
itgbl1 itgbl1,LOC102787049 coding downstream 94555 23494941 ~ 23538664 (+)
cfap97d2 NA coding downstream 256868 23657254 ~ 23663191 (+)
cdc16 cdc16,LOC102786741 coding downstream 262954 23663340 ~ 23677275 (+)
upf3a upf3a,LOC104960519 coding downstream 279272 23679658 ~ 23689877 (+)
p2ry8 p2ry8,gpr82,LOC103134757 coding downstream 290450 23690836 ~ 23695194 (+)
G126447 NA non-coding upstream 47071 23352577 ~ 23352820 (+)
G126439 zic5,LOC102789084 non-coding upstream 163068 23232867 ~ 23236823 (+)
LOC120569671 NA non-coding upstream 430721 22966626 ~ 22969170 (+)
G126358 NA non-coding upstream 601579 22797901 ~ 22798312 (+)
G126352 NA non-coding upstream 628971 22770710 ~ 22770920 (+)
G126515 NA non-coding downstream 303999 23704385 ~ 23704642 (+)
G126516 NA non-coding downstream 304557 23704943 ~ 23705702 (+)
G126519 NA non-coding downstream 310017 23710403 ~ 23711118 (+)
G126520 NA non-coding downstream 313102 23713488 ~ 23713977 (+)
G126563 NA non-coding downstream 545758 23946144 ~ 23947968 (+)
dachd LOC107389725,LOC105927577,LOC103357501,LOC103134744 other upstream 299808 22978602 ~ 23100083 (+)
G126363 lmo7 other upstream 584789 22807193 ~ 22815102 (+)
fbxl3a fbxl3 other upstream 661238 22730923 ~ 22738653 (+)
LOC120569986 LOC103372298,LOC100698342,LOC102199663,LOC102299751,LOC101469554,LOC102782232 other upstream 1708087 21655126 ~ 21691804 (+)
sox1a LOC103372296,LOC101481640,LOC100691128 other upstream 1765134 21619348 ~ 21634757 (+)
cwc22 cwc22 other downstream 783563 24183949 ~ 24199835 (+)
sestd1 sestd1 other downstream 876771 24277157 ~ 24298218 (+)
fzd5 LOC104950716,LOC108238837 other downstream 972085 24372471 ~ 24394985 (+)
cacnb4a cacnb4 other downstream 2229721 25630107 ~ 25664427 (+)
G127165 LOC100691947,LOC102776592,LOC101469272,LOC102213137 other downstream 2716602 26116988 ~ 26129879 (+)

Expression


Co-expression Network