RNA id: TU170149


Basic Information

Item Value
RNA id TU170149
length 358
lncRNA type inter_gene
GC content 0.53
exon number 2
gene id G126463
representative True

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 23399891 ~ 23400386 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGCTGCGAAGGGTTGTCTGGGTTGTTAGCATTGTGGTCTTCACTTGGCAAGGTGGTCTCTATGCTGGGGGGGTTAAGGAAGCGGCTCAACTCCTGCTGCTGGCTTTCTCTCAGGCTGTGGATGATGCTACAcgactgctgctgcttCGCCCGGATGCGTTTGAGGCATTTCTTGAGCCACATGCGTATGGTCTGTTTGGCAACCTCTTCTTCAATGGTGTACTCCAACTGTTCCCTGGCCAACAGCTCCTCCAGCTGGAGAGACTTTCTAATGTCCACTGAGCGATATGACAGCATGctgtttgacacacacacacacacacacacacacacacacacacacacacacacacacacac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU170130 lncRNA upstream 47071 23352577 ~ 23352820 (+) True G126447
TU170121 lncRNA upstream 163068 23232867 ~ 23236823 (+) True G126439
TU170077 lncRNA upstream 300101 23093298 ~ 23099790 (+) False dachd
XR_005640940.1 lncRNA upstream 430721 22966626 ~ 22969170 (+) True LOC120569671
XR_005640941.1 lncRNA upstream 430721 22966626 ~ 22969170 (+) False LOC120569671
TU170213 lncRNA downstream 303999 23704385 ~ 23704642 (+) True G126515
TU170214 lncRNA downstream 304557 23704943 ~ 23705702 (+) True G126516
TU170217 lncRNA downstream 310017 23710403 ~ 23711118 (+) True G126519
TU170218 lncRNA downstream 313102 23713488 ~ 23713977 (+) True G126520
TU170273 lncRNA downstream 545758 23946144 ~ 23947968 (+) True G126563
XM_039819120.1 mRNA upstream 152231 23243632 ~ 23247660 (+) True zic2a
XM_039818761.1 mRNA upstream 177650 23159965 ~ 23222241 (+) True clybl
XM_039818141.1 mRNA upstream 299808 22978602 ~ 23100083 (+) False dachd
XM_039818106.1 mRNA downstream 94555 23494941 ~ 23538664 (+) True itgbl1
XM_039818471.1 mRNA downstream 256868 23657254 ~ 23663191 (+) True cfap97d2
XM_039818725.1 mRNA downstream 262954 23663340 ~ 23677275 (+) True cdc16
XM_039818654.1 mRNA downstream 279272 23679658 ~ 23689877 (+) True upf3a
XM_039818655.1 mRNA downstream 279272 23679658 ~ 23689877 (+) False upf3a
TU169945 other upstream 584789 22807193 ~ 22815102 (+) True G126363
XR_005641000.1 other upstream 1711089 21655131 ~ 21688802 (+) False LOC120569986
XR_005641085.1 other upstream 1772439 21619348 ~ 21627452 (+) False sox1a
TU169142 other upstream 2534449 20860152 ~ 20865442 (+) True G125757
TU169140 other upstream 2540981 20853089 ~ 20858910 (+) True mpc2b
XR_005641105.1 other downstream 1466935 24867321 ~ 24867439 (+) True LOC120570682
TU170822 other downstream 2229721 25630107 ~ 25658726 (+) False cacnb4a
TU170823 other downstream 2239420 25639806 ~ 25658726 (+) False cacnb4a
TU171128 other downstream 2716602 26116988 ~ 26129879 (+) True G127165
TU171231 other downstream 3011125 26411511 ~ 26417667 (+) False mphosph8

Expression Profile