RNA id: TU171231


Basic Information

Item Value
RNA id TU171231
length 714
RNA type TUCP
GC content 0.50
exon number 3
gene id mphosph8
representative False

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 26411477 ~ 26439285 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGAGCTGCAGAGCTAGCTAGTGCAGTAAGTAACTACGGCCAGGTACGCTAACGTCCTGCCTCTGTGAAAACAGCCAACGCGGCCTTTACGAGTGCTGGATTAAAAGTAGCTACATTTTTTATCAAACCCGCAGTCATGGCGGCTGAGGCTGACAAGGTAGAGCCTGCGGATAGCGAGCAAGAAGAGGAAGTCGAAGATGTGTACGAAGTGGAGAGGATCATTGACATGCGGGTGGAAGAGGGTGAAGTGCTCTACAGAGTCCGTTGGAAGAATTACTGCTCGGATGATGACACTTGGGAGCCAGAGGCCCATTTAGAGGACTGTCGCGAGGTCCTCTTAGCTTTTAAGAAGTCCATGGCTGAGGTCAAGGCCAAGAAAGAGGCAGAAGCCAAGAAGATTGTGAAACCGCTGCCTGCAAAGAGTGACGTGTTTGATGCCGACTCCGAGAGTGAAAGTGAGGGCAAAGACCATCCAACTGAGGAGGCcatcaagaaaaagaaaaagacaaaggtCCGGGAAAAAGAGGAGGAACCACctccaaaagagaaaaagaagaagaagaaagatagACGGAAGGAGGAGTTCAGGCCTCTACCGGCACCCGAGACAGATGAcgaagacgaagaagaagaggagaaagccCAGACTCCACCCTCTCCTCTCAAGGAGAAGAAGACTGATTCAAAAAAACGTTTGGTTGACtctgaagggggg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU171182 lncRNA upstream 54602 26352887 ~ 26356909 (+) True G127209
TU171175 lncRNA upstream 118722 26292443 ~ 26292789 (+) True G127204
TU171174 lncRNA upstream 143410 26267885 ~ 26268101 (+) True G127203
TU171040 lncRNA upstream 312970 26098273 ~ 26098541 (+) True G127095
XR_005641034.1 lncRNA upstream 327006 26081889 ~ 26084505 (+) True LOC120570231
TU171246 lncRNA downstream 23729 26441396 ~ 26442298 (+) True G127264
TU171247 lncRNA downstream 59539 26477206 ~ 26483232 (+) False zmym2
TU171249 lncRNA downstream 59539 26477206 ~ 26484049 (+) False zmym2
TU171264 lncRNA downstream 85892 26503559 ~ 26505543 (+) True G127273
TU171257 lncRNA downstream 92508 26510175 ~ 26518288 (+) True G127270
XM_039817854.1 mRNA upstream 750 26396070 ~ 26410761 (+) True ttf2
XM_039817850.1 mRNA upstream 37607 26314786 ~ 26373904 (+) True rnf17
XM_039817851.1 mRNA upstream 37607 26314786 ~ 26373904 (+) False rnf17
XM_039817791.1 mRNA upstream 284400 26099440 ~ 26127111 (+) False LOC120569747
XM_039817793.1 mRNA upstream 284400 26099440 ~ 26127111 (+) False LOC120569747
XM_039818026.1 mRNA downstream 31776 26449443 ~ 26484088 (+) True zmym2
XM_039818027.1 mRNA downstream 32742 26450409 ~ 26484088 (+) False zmym2
XM_039819109.1 mRNA downstream 118286 26535953 ~ 26560881 (+) True ift88
XM_039819110.1 mRNA downstream 118286 26535953 ~ 26560881 (+) False ift88
XM_039819111.1 mRNA downstream 118287 26535954 ~ 26560881 (+) False ift88
TU171128 other upstream 281632 26116988 ~ 26129879 (+) True G127165
TU170822 other upstream 752785 25630107 ~ 25658726 (+) False cacnb4a
TU170823 other upstream 752785 25639806 ~ 25658726 (+) False cacnb4a
XR_005641105.1 other upstream 1544072 24867321 ~ 24867439 (+) True LOC120570682
TU169945 other upstream 3596409 22807193 ~ 22815102 (+) True G126363
XR_005641067.1 other downstream 1970983 28388650 ~ 28409839 (+) True prkag3b
TU171918 other downstream 2611235 29028902 ~ 29041224 (+) True G127814
TU172007 other downstream 2878817 29296484 ~ 29299361 (+) True LOC120569952
TU172063 other downstream 3041477 29459144 ~ 29459978 (+) True G127932
TU172070 other downstream 3050459 29468126 ~ 29474550 (+) False G127935

Expression Profile