RNA id: TU171246


Basic Information

Item Value
RNA id TU171246
length 903
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G127264
representative True

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 26441396 ~ 26442298 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

atgattatttatcaaaaatctcattgtgtaaatatttgtttgtaagcaccaattgtcaaccctataatatcgccgcaatatcgatattgaggtatttggtcaacaatatcgtgatattagattttttacatatcgcccagctctaattgCAACCAACCATTTTGCAAATCACTCTGATGTGTTTCAtagtttttaatgtattttttcctACTTTCCAGGCAGTAATCGGTTTCCATGTTTTGCCAAATGGGACGAAAATCAACCACAGACTCTTGGAACTTGTTTGAGATGTAGACTACGGTATAAACCATCACAGTGAGCATTCAATctgccattcattttttttttattatcattatagCAGACTTTTCAAATCAATCTGGACTTTAAACTGTTTAGTCTGCCTCCATAATGATGCTTTAACAAAAAGCAATTATTATACTACAGTAATGGAACTTTAAGCTGCATTATTGAATGTAATTTTCACTGTGATGGAATATGTAGCAAGTTTCAAGAGTCTGGTAATTGGTTTTAACAATGCATGGAAATGAATAGAAGTCAGAAggaaaaatgaataaagaaatcTAAAACTTCTAAGCATTCATTCAGAAGTCGTCAGTAGTAAGGAACAATATGTAGGATTTGTAGTTGAGACAAAGCTTGTAAAACAGTGGTATGGTCCTTTTAAGAGAAATGTGAACAAGCTGGTTTATGACGTATGAAGAGACCAACAGTTTGCCTTGATTCTCCTTGTTTGCTGATAGTTTTAACACTGGTTTGCTAACTACTTTGCCAATCCCCTTCACTTCAAGATTCTTCTATCTCGCCTCTAGAATACACACCTTTTACTTACACAAATATTTGGCTCTGAATGTTCCTGCAGGTAGACGTGCACCTACGGTA

Function

GO:

id name namespace
GO:0050877 nervous system process biological_process
GO:0050953 sensory perception of light stimulus biological_process
GO:0007600 sensory perception biological_process
GO:0007601 visual perception biological_process
GO:0003008 system process biological_process

KEGG:

id description
ko04744 Phototransduction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU171182 lncRNA upstream 84487 26352887 ~ 26356909 (+) True G127209
TU171175 lncRNA upstream 148607 26292443 ~ 26292789 (+) True G127204
TU171174 lncRNA upstream 173295 26267885 ~ 26268101 (+) True G127203
TU171040 lncRNA upstream 342855 26098273 ~ 26098541 (+) True G127095
XR_005641034.1 lncRNA upstream 356891 26081889 ~ 26084505 (+) True LOC120570231
TU171247 lncRNA downstream 34908 26477206 ~ 26483232 (+) False zmym2
TU171249 lncRNA downstream 34908 26477206 ~ 26484049 (+) False zmym2
TU171264 lncRNA downstream 61261 26503559 ~ 26505543 (+) True G127273
TU171257 lncRNA downstream 67877 26510175 ~ 26518288 (+) True G127270
TU171330 lncRNA downstream 193933 26636231 ~ 26640460 (+) True G127332
XM_039818320.1 mRNA upstream 2111 26411477 ~ 26439285 (+) True mphosph8
XM_039817854.1 mRNA upstream 30635 26396070 ~ 26410761 (+) True ttf2
XM_039817850.1 mRNA upstream 67492 26314786 ~ 26373904 (+) True rnf17
XM_039817851.1 mRNA upstream 67492 26314786 ~ 26373904 (+) False rnf17
XM_039817791.1 mRNA upstream 314285 26099440 ~ 26127111 (+) False LOC120569747
XM_039818026.1 mRNA downstream 7145 26449443 ~ 26484088 (+) True zmym2
XM_039818027.1 mRNA downstream 8111 26450409 ~ 26484088 (+) False zmym2
XM_039819109.1 mRNA downstream 93655 26535953 ~ 26560881 (+) True ift88
XM_039819110.1 mRNA downstream 93655 26535953 ~ 26560881 (+) False ift88
XM_039819111.1 mRNA downstream 93656 26535954 ~ 26560881 (+) False ift88
TU171231 other upstream 23729 26411511 ~ 26417667 (+) False mphosph8
TU171128 other upstream 311517 26116988 ~ 26129879 (+) True G127165
TU170822 other upstream 782670 25630107 ~ 25658726 (+) False cacnb4a
TU170823 other upstream 782670 25639806 ~ 25658726 (+) False cacnb4a
XR_005641105.1 other upstream 1573957 24867321 ~ 24867439 (+) True LOC120570682
XR_005641067.1 other downstream 1946352 28388650 ~ 28409839 (+) True prkag3b
TU171918 other downstream 2586604 29028902 ~ 29041224 (+) True G127814
TU172007 other downstream 2854186 29296484 ~ 29299361 (+) True LOC120569952
TU172063 other downstream 3016846 29459144 ~ 29459978 (+) True G127932
TU172070 other downstream 3025828 29468126 ~ 29474550 (+) False G127935

Expression Profile