RNA id: TU170121


Basic Information

Item Value
RNA id TU170121
length 830
lncRNA type inter_gene
GC content 0.50
exon number 2
gene id G126439
representative True

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 23232867 ~ 23236823 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ggggggaggggggggggGGGTGAGAAAGTTCTATTCAAAAATGTGCCCACTTTAGAATGGTTGGTCCTTTCAAATAAGAAGcaaggtttttttaacatttcatttcaattcTAATGTCGgtgtcaaatgttttattttgacagttttGATCTGCATTTTAAGAAAGGTCAGGGGTCACCTTCAGATAAATTCTTCCTCAGGTAGTTAAGCCGACACTGCATCCACGAATAATAGTGAATTATCTGCATTGAGCACAGTCGTTTAATAATACTACAGTGAAAATAACTGATCAATATCCCAAGCGCACGGGCCAGCATGGATCTACACACAGAGTCACGTTAACGGGTCGACTAGATGACAAGTTGGACAGTCAGTGGTTGTAAACGGGGCGTCAGAGCATTGTCCTCGGGTCTGAATTTCTGAAAGAGTCCTCGTCTGAATCTGACGTTGGCACATCGCTGGAGGGGGTGTGGAGGTGGTTGGGTCCTCCGCTCCCCTGGCAGACGTACCACTCGTTGAGGTTGGTGACCTGAGGGGAGAGGTTCGCGGAGCGGTTCCTGTGCGGCTCGGAGTTGGGTGAAAGAGGGTCTCCGAGTGGATTTGTGGAGGAAATGTAGCTGACGTTGGTGGAAGGGGGCGGCGGAGACTTGCAGTGCACTTTCATGTGCTTCCGCAGCGAGCTCGGGTGTGTGTAGGATTTGTCACAGCCACGGACTTTGCAGTAGTAAGGCTTGTCGCTGGTGTGGACGTGAGAGTGCTTCTTCCGGTCGCTGCTGTTGGCGAATTTTCTGTCACAGCCGTCAAACTCGCACTtgaaaggtttctctcct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU170077 lncRNA upstream 133077 23093298 ~ 23099790 (+) False dachd
XR_005640940.1 lncRNA upstream 263697 22966626 ~ 22969170 (+) True LOC120569671
XR_005640941.1 lncRNA upstream 263697 22966626 ~ 22969170 (+) False LOC120569671
TU169937 lncRNA upstream 434555 22797901 ~ 22798312 (+) True G126358
TU169931 lncRNA upstream 461947 22770710 ~ 22770920 (+) True G126352
TU170130 lncRNA downstream 115754 23352577 ~ 23352820 (+) True G126447
TU170149 lncRNA downstream 163068 23399891 ~ 23400386 (+) True G126463
TU170213 lncRNA downstream 467562 23704385 ~ 23704642 (+) True G126515
TU170214 lncRNA downstream 468120 23704943 ~ 23705702 (+) True G126516
TU170217 lncRNA downstream 473580 23710403 ~ 23711118 (+) True G126519
XM_039818761.1 mRNA upstream 10626 23159965 ~ 23222241 (+) True clybl
XM_039818131.1 mRNA upstream 132784 22978602 ~ 23100083 (+) False dachd
XM_039818136.1 mRNA upstream 132784 22978602 ~ 23100083 (+) False dachd
XM_039818138.1 mRNA upstream 132784 22978602 ~ 23100083 (+) False dachd
XM_039818139.1 mRNA upstream 132784 22978602 ~ 23100083 (+) False dachd
XM_039819120.1 mRNA downstream 6809 23243632 ~ 23247660 (+) True zic2a
XM_039818106.1 mRNA downstream 258118 23494941 ~ 23538664 (+) True itgbl1
XM_039818471.1 mRNA downstream 420431 23657254 ~ 23663191 (+) True cfap97d2
XM_039818725.1 mRNA downstream 426517 23663340 ~ 23677275 (+) True cdc16
XM_039818654.1 mRNA downstream 442835 23679658 ~ 23689877 (+) True upf3a
TU169945 other upstream 417765 22807193 ~ 22815102 (+) True G126363
XR_005641000.1 other upstream 1544065 21655131 ~ 21688802 (+) False LOC120569986
XR_005641085.1 other upstream 1605415 21619348 ~ 21627452 (+) False sox1a
TU169142 other upstream 2367425 20860152 ~ 20865442 (+) True G125757
TU169140 other upstream 2373957 20853089 ~ 20858910 (+) True mpc2b
XR_005641105.1 other downstream 1630498 24867321 ~ 24867439 (+) True LOC120570682
TU170822 other downstream 2393284 25630107 ~ 25658726 (+) False cacnb4a
TU170823 other downstream 2402983 25639806 ~ 25658726 (+) False cacnb4a
TU171128 other downstream 2880165 26116988 ~ 26129879 (+) True G127165
TU171231 other downstream 3174688 26411511 ~ 26417667 (+) False mphosph8

Expression Profile