RNA id: XM_039818139.1


Basic Information

Item Value
RNA id XM_039818139.1
length 4114
RNA type mRNA
GC content 0.46
exon number 13
gene id dachd
representative False

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 22978602 ~ 23100083 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gaagaagaagaagaagaagaagaagacttctGGCAGTGCGAGACAAGTTGCTGCACCAGTGTTTGGGATTTTCTAAGCAAGGTGGCTGCAGTGCCGTCGCAATGCGGTCCATCCAATCCTCCTGGCTCGAGAGTGTTGGCAAGCTCCTCTGATCCCCAAAATGATGGTGGCAAGTCGACCTCAAGTCAAGGTGACCATGGCCATACCGGCTGCTCTGATCCCACCAACCCCTCTGGTCCCACCGCCTCCGATCTCGACTCCCTCCGCGACGACGTCCCCGCCGTCGACAACTTCATCACCATCTCCATCCCTGGCTCCCCCATCCGGACCCGGACAGAACCTCTTCAGATCAGACCTCCTTACCACCGGCAGCCCGGGCATCCCGAACGCGGGTCTACCTCCCGGCAAACCCGTGTACTCAACCCCGTCGCCTGTTGAAAACATACCGCAAAACAACGAGTGCAAGATGGTCGAGTTGCGCGGTGCAAAAGTGGCCTCTTTCACCGTGGACGGCAGCGAGCTCATCTGCCTTCCTCAGGCTTTCGACCTGTTCCTGAAGCACCTGGTCGGCGGACTGCACACGGTCTACACCAAGCTGAAGCGGCTGGAGATCACGCCGGTGGTGTGCAATGTGGAGCAGGTCCGCATCCTCAGAGGGCTCGGCGCCATCCAACCTGGGGTGAACCGCTGTAAACTCATCTCCAGAAAAGACTTCGAGACTCTGTACAACGACTGCACTAATGCGAGCTCCAGACCCGGCCGACCTCCGAAGAGGACCCAGAGTGTGACATCGCCGGAGAACCCCCACATCATGCCCCACTCGGTCCCTGGCCTCATGTCCCCTGGCATGATCCCACCCACAGGCCTGACAGCAGCGGCGGCAGCAGCTGCCAACGCAGCCATCGCAGAGGCCATGAAGGTCAAGAAGATCAAGCTGGAGGCGATGAGCGGCTACCACGGCAACGCCAACCACCATGGGGCTGACGGAGAGAATGGAGACCTCAGCTCCAGCGTCGGCCTGGAACTCCCCTTCATGATGATGCCACACCCCCTGATCCCAGTCAGCCTGCCTCCAGCCTCTGTCACCATGGCGATGAGCCAGATGAACCACCTCAGCACCATTGCAAACATGGCCGCCGCAGCACAGGGCCAGAGTCTGCCCTCCAGAATGGTCACCTCTGTTATAAAGGTGCTGCTGGGGTTTCAGGAACGGGTGCCGGACAGTCCCTCCCCTGCTCCTTCCTTAGAAGACCACAGGAGGCCAGGCAGTCACCCATCGTCTCACCGCAGCAGCAGTGTGTCCAGCTCCCCAGCCCGCACAGAAAGCTCGTCAGACAGGATACCGATACACAACAATGGTCTGTCCATGAACCACGCCCTGCTAGGCCTGTCCCCCAACATCCCGCCTGGGCCTAAAGAGGGAGACCTGGCCCACGACATGAGCCATGAATTAAAGAGGATGCACACTGACAAAGAGGACAACTCCATGTGCACCCCGACAGCAAGAGATAGCTACGAAAGGTTGTCATTTGCTGGACAGGCCCTGCCTCCTGGCTTCCCCTCACCATTTCTCTTCCCAGATGGCTTGTCGTCAATAGAAACTCTCCTCACCAACATACAGggCCTGCTCAAAGTGGCTATTGACAATGCGCGGGCTCAGGAGAAGCAGGTGCAGCTGGAGAAGACGGAGCTGAAGATGGAGCTgttcagagagagggagctCAGGGAGACTCTGGAGAAGCAGCTCGCCATGGAGCAGAAGAACAGAGCAATCATTCAGAAGCGcctgaagaaggagaagaaggccAAGAGGAAACTCCAAGAAGCTCTGGAGTACGAATCCAAGAGGAGAGAGCAGGCTGAGCAGACCCTGAAGCAGCCCTCGCCCTCTGACAGCATGCGTTCACTCAACGaATCTCTGACCCCTGAGATGGAGAGTGACCGCAGCAGTGGAAGAACAGATGCTGAAAGGACAATACAAGATGGAAGACTGTTCCTGAAAACCACCGTGATGTACTGATAAGGCCGTGAGGAGCTGGAGGAAAtaaaaatttcagaaaaaaagaagaagaagaggaaaaaaaaaaaacgaaagaaAAGAAACCCCATGAAGATTCTCAAGAGCCCTTATCCAGGCTGATTTAGTAAGAGGAAAGAAGTCAAGCTGCTTGTAGGAGTTCAATGGAAAATGCTGTGTTCACCCAAATGCTGGAGGAGGTTGTGTCTGAATGTAGAATAAGAAGTCTTTTTCTCACAGAGGCCGACATGAAATAGTTTGATAGAGCAGCTTTTGACGTAGCGGGTTGGCCGACGTGAAGGATAACCATATATATTGAGCACAGTAAAAAATGTACCCATGGTACACTGTTGGTAATAACTCGTAAATTCACAGCACTGAAGATTTTTATACTGTATCTCAGCCAGCgagaaagctttgaaaaagAAATTCGACTGAAgttgtgttttgtatttcaaaTAGAATTTTGAGAAGCTAAAAATGACACGTGGAGATGAACCTTgtgaggagaaaagaaaaatgtgaatcTATCCATGTGTTCATCAAAAGAGAAGACTGATGTTTGATTTTCATGTTTTCTAAATTAGATGACAATACAATCATGTTTCGTTTTTACCATTGTTGTATATACAAGATCTGATGATAATGACAGTAAAACTCGCTCTATCGAACCCGAGTGGATTGATGAGGTATGTGTATATAACGTTAAGAGGTATTGTGTATGCAGTAGAGATATTAGGCAAACAATACCACCATTTATATAAACctacaattttgttttgttctatTTCTGAGCCACCATTCTTTCCTATAGCTGCCATTTTGGTGAGAAAGCATGCAGGCATGTAAATGTTTGTCCTGGAATTATGATATTTAATAAATCCTATATTGTGCTGAACAAATACTAGGGTTGACTCACTCAAGCCCAGATGGTTTTGAAAACATAATTATCAAACATTTCACTTTCAAAATGAAGACTTTTGCTGTCGATAGTACTGTAATCTTTGTAACAAAGGTAATATTTCTTGGaatttactgtacattttttgtCATGAGGCACTCAAAATCAGCAACTCTCAatgcttttttaaaaagaaaatatccaGACTAATTATGATCACGTGTCAGTTTGAGAAACGGTCACGACACAACTTTTTCGAGACTGAACGCCATTTGATTACATTGCTCAAACAcagttctcttttcttttttagagtGTTTCATGATATCCtggtgagaaagaaaaaaaaaacataagttaAAATTTCCTGTTACTTTCCCTAAATGCGTTTTGAATTTTGGTGCTGTAACACCTGTGTATATTCTGTAGACATGAGCTGATGTCAGTCCTTTTAACTGAAAAACAGTTTAGACCTTACGTGTTACAATCAGGAGAGGAGTGTCCCATGTTCACAATGTGTTTGTTCTTTTTGTTCTCAATGGAGTGTCTAGGTCTGTTGTCACTGATAACTTATATAGCTTCTCGAATCATCTCTTCATTGTACTTCAAATTCAAATAAAGTTAACATGTTGATGATAAACTATGTGAGTTAACTATGTTGCCCGAACACACTTCTCTGTCGCACTTGTGTTTGAAAACGGCGAGTGTTTTTGAGGTAGAAGTCACACAGTTTTAACATTCCAGATCCAGCTTGATACAGAAGACAGCCAAACGTATCAGTTCAAGGTGATCTGATACCaatgtaaactaatgttaaAGGCAGCTCCTTTTTGTTTTGCGATTCTGAATCATCCTTGTGTTTTTGGCGTATTCGTTTTTTTGAGACCTTTACAATCAGCGCTCAGTCTTGTAATTCATTTCAGTGTATTATGTATggcctgaaaaaaaaatttgcagGTATACTATAGAAAAATAAATGAGCATATTGTTCTTTGCTTAAGAAAATGCAATGAGTAATCAAATGGTGAGAATATCTTGTGTAACCTTTCCTTTTCACTGAGTGTGGAtgcgagagtgtgtgtgtgtgtgtgtgtgtgtaccctttgacttttttaaagaaaaacatgctAATCCTATATAAACTATGTAAATGAGGGTGTGACCGAGCTCActgtaaataaattatttcatgTTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005640940.1 lncRNA upstream 9432 22966626 ~ 22969170 (+) True LOC120569671
XR_005640941.1 lncRNA upstream 9432 22966626 ~ 22969170 (+) False LOC120569671
TU169937 lncRNA upstream 180290 22797901 ~ 22798312 (+) True G126358
TU169931 lncRNA upstream 207682 22770710 ~ 22770920 (+) True G126352
TU169856 lncRNA upstream 239949 22734060 ~ 22738653 (+) False fbxl3a
TU170121 lncRNA downstream 132784 23232867 ~ 23236823 (+) True G126439
TU170130 lncRNA downstream 252494 23352577 ~ 23352820 (+) True G126447
TU170149 lncRNA downstream 299808 23399891 ~ 23400386 (+) True G126463
TU170213 lncRNA downstream 604302 23704385 ~ 23704642 (+) True G126515
TU170214 lncRNA downstream 604860 23704943 ~ 23705702 (+) True G126516
XM_039817669.1 mRNA upstream 17848 22914378 ~ 22960754 (+) True klf12b
XM_039818761.1 mRNA downstream 59882 23159965 ~ 23222241 (+) True clybl
XM_039819120.1 mRNA downstream 143549 23243632 ~ 23247660 (+) True zic2a
XM_039818106.1 mRNA downstream 394858 23494941 ~ 23538664 (+) True itgbl1
XM_039818471.1 mRNA downstream 557171 23657254 ~ 23663191 (+) True cfap97d2
XM_039818725.1 mRNA downstream 563257 23663340 ~ 23677275 (+) True cdc16
TU169945 other upstream 163500 22807193 ~ 22815102 (+) True G126363
XR_005641000.1 other upstream 1289800 21655131 ~ 21688802 (+) False LOC120569986
XR_005641085.1 other upstream 1351150 21619348 ~ 21627452 (+) False sox1a
TU169142 other upstream 2113160 20860152 ~ 20865442 (+) True G125757
TU169140 other upstream 2119692 20853089 ~ 20858910 (+) True mpc2b
XR_005641105.1 other downstream 1767238 24867321 ~ 24867439 (+) True LOC120570682
TU170822 other downstream 2530024 25630107 ~ 25658726 (+) False cacnb4a
TU170823 other downstream 2539723 25639806 ~ 25658726 (+) False cacnb4a
TU171128 other downstream 3016905 26116988 ~ 26129879 (+) True G127165
TU171231 other downstream 3311428 26411511 ~ 26417667 (+) False mphosph8

Expression Profile