RNA id: TU169856


Basic Information

Item Value
RNA id TU169856
length 612
lncRNA type sense_over
GC content 0.34
exon number 2
gene id fbxl3a
representative False

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 22730923 ~ 22738653 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tttttttattttttttttgATATTTCATGTTAACCAAACAGTGCTGTAGATTAAAACTGAGACACGTGTTGCAGTACGTATGTTGCAAACGTTTCTTAGTTTTATTGGATTGAACTAAGTCTATTGATTAGTATTGGTCTCTCTTATCACTGATGTTAGATACCTGTGCTGATTGTCTGTGCTCTTGTGCATTAGCATCTCCATGGTACAGTAACATAtcctgatttctttttttatttctaatgaTTTGTGCAGTACATTAAAGGGTTGCCGTGTCAGCAGCTTTAAAGTGACGGTTGTGTCTCGTAACCATTTTCCTGTTGTTTTTATTGGCTTTCATTGGGAATTTCAGTAGAGTAAAacatgtttcatttaaatacaGATAAAATACAATCATTAAGATGTCAGTAATTGTTTTAACCTAGTGTGTCCTCCGAGTCCTCCAGTAAGTTTTATTAGGGGTATACTGGTGTTGACAATGCTGTCCTTCTAGTTTTGCTTCTGTTTGGCAAATGCTTTGTCTACTTTGCTTAACTGGTCACCTGTCTTGAAATTAAAATTGTTTTGGACATGTGATCTTATACCAGTAATAAAGATTTATGAATGTACTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU169843 lncRNA upstream 75168 22657517 ~ 22658892 (+) True G126290
TU169833 lncRNA upstream 94298 22639470 ~ 22639762 (+) True G126280
TU169807 lncRNA upstream 113452 22616311 ~ 22620608 (+) False G126267
TU169808 lncRNA upstream 115139 22616311 ~ 22618921 (+) True G126267
TU169782 lncRNA upstream 196547 22535131 ~ 22537513 (+) True G126246
TU169931 lncRNA downstream 32057 22770710 ~ 22770920 (+) True G126352
TU169937 lncRNA downstream 59248 22797901 ~ 22798312 (+) True G126358
XR_005640940.1 lncRNA downstream 227973 22966626 ~ 22969170 (+) True LOC120569671
XR_005640941.1 lncRNA downstream 227973 22966626 ~ 22969170 (+) False LOC120569671
TU170077 lncRNA downstream 354645 23093298 ~ 23099790 (+) False dachd
XM_039817880.1 mRNA upstream 3637 22668306 ~ 22730423 (+) True mycbp2
XM_039817885.1 mRNA upstream 3637 22668306 ~ 22730423 (+) False mycbp2
XM_039817890.1 mRNA upstream 3637 22668306 ~ 22730423 (+) False mycbp2
XM_039817892.1 mRNA upstream 3637 22668306 ~ 22730423 (+) False mycbp2
XM_039817886.1 mRNA upstream 3637 22668306 ~ 22730423 (+) False mycbp2
XM_039817904.1 mRNA downstream 5807 22744460 ~ 22747518 (+) True zgc:162944
XM_039817088.1 mRNA downstream 14452 22753105 ~ 22754604 (+) True kctd12.1
XM_039817698.1 mRNA downstream 112288 22850941 ~ 22855543 (+) True commd6
XM_039817696.1 mRNA downstream 118297 22856950 ~ 22887388 (+) True tbc1d4
XM_039817693.1 mRNA downstream 130403 22869056 ~ 22887388 (+) False tbc1d4
XR_005641000.1 other upstream 1045258 21655131 ~ 21688802 (+) False LOC120569986
XR_005641085.1 other upstream 1106608 21619348 ~ 21627452 (+) False sox1a
TU169142 other upstream 1868618 20860152 ~ 20865442 (+) True G125757
TU169140 other upstream 1875150 20853089 ~ 20858910 (+) True mpc2b
TU168970 other upstream 2212786 20492178 ~ 20521274 (+) False G125627
TU169945 other downstream 68540 22807193 ~ 22815102 (+) True G126363
XR_005641105.1 other downstream 2128668 24867321 ~ 24867439 (+) True LOC120570682
TU170822 other downstream 2891454 25630107 ~ 25658726 (+) False cacnb4a
TU170823 other downstream 2901153 25639806 ~ 25658726 (+) False cacnb4a
TU171128 other downstream 3378335 26116988 ~ 26129879 (+) True G127165

Expression Profile