RNA id: XR_005640940.1


Basic Information

Item Value
RNA id XR_005640940.1
length 982
lncRNA type inter_gene
GC content 0.41
exon number 3
gene id LOC120569671
representative True

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 22966626 ~ 22969170 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTCGGCTGTCAGTGGCGCGGTGGTTGTATGAAGAAACTGCGCGTCCTGCCCCGGAGCAACCCAAACGTTATTCCTCACGGCAGCGGCCATAAAAGCAGAGGTGTATGAAGTACTACCCTATGTCGGTGATTGTGTCAGTGCAACATGCTGGAACTGGAAACACAGGTCTTTGCTGTCCAGGCCTCTCAGCTGTGAAACTTCATGACCGAGGATCAAAGTCTTCTTATGAAATCCCTCCTCAAAACTAACTTTTATCTCATGGCCTTCTCCTAACTCACTGTAATTTGTTAGATTTGTTTTAATCATGATATCATTTTACTTATTATAATTTAAattcttattttattctttttttgttgttgttcttctgtTAATCCTTGTTTTGCTGCAAAGCACTTTGTAATGTTTTGGAAACATGCATTATAAATGCATTTACATTATCACCATTATTTGATATTGTGTTTCTACTTCTACTAATTATTTTTGATTATGTGATGATATTTTTTCGGGTGCCACACAATAGAAATTCTTCAAAGCACTAATGTTATCCAAATGAGCGTTCACCAAGAAAGTGCTCACATGTTCATATTTTACACGATgcagtcaaaaaaaaaacggaGACATATTCAAATGACTGCTGATCATCCAATTAGGGGCTGATTGATTGCATGTCATGTGCTGACCTTTCACAGTGCAATTTAAATCCATGGATGTCTCAGCTCCAAGAGGAGCAACTGTCATTCTTGGCCGTGGCTCTTCCTGCACAGCGAATGTGAGCCGAGCCCTCCTCCATATCCCCCGTATTAAAACCTCACAATATGCCCAACAACTGCACAGCGGAGGAGAGAGAATGCACGGTATGTGCTTACAGCATCAcaactcctctctcctctcacatGGACTAATATGGCCAAGCCAAGAGGGGATAGGACAATAAACACATAGAGCACATTGCTACTGTAAGCAcagtgtgcttttattt

Function

GO: NA

KEGG:

id description
ko00590 Arachidonic acid metabolism

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU169937 lncRNA upstream 168314 22797901 ~ 22798312 (+) True G126358
TU169931 lncRNA upstream 195706 22770710 ~ 22770920 (+) True G126352
TU169856 lncRNA upstream 227973 22734060 ~ 22738653 (+) False fbxl3a
TU169843 lncRNA upstream 307734 22657517 ~ 22658892 (+) True G126290
TU169833 lncRNA upstream 326864 22639470 ~ 22639762 (+) True G126280
TU170077 lncRNA downstream 124128 23093298 ~ 23099790 (+) False dachd
TU170121 lncRNA downstream 263697 23232867 ~ 23236823 (+) True G126439
TU170130 lncRNA downstream 383407 23352577 ~ 23352820 (+) True G126447
TU170149 lncRNA downstream 430721 23399891 ~ 23400386 (+) True G126463
TU170213 lncRNA downstream 735215 23704385 ~ 23704642 (+) True G126515
XM_039817666.1 mRNA upstream 5872 22914201 ~ 22960754 (+) False klf12b
XM_039817669.1 mRNA upstream 5872 22914378 ~ 22960754 (+) True klf12b
XM_039817667.1 mRNA upstream 5872 22914378 ~ 22960754 (+) False klf12b
XM_039817668.1 mRNA upstream 5872 22919946 ~ 22960754 (+) False klf12b
XM_039817665.1 mRNA upstream 5872 22931246 ~ 22960754 (+) False klf12b
XM_039818131.1 mRNA downstream 9432 22978602 ~ 23100083 (+) False dachd
XM_039818136.1 mRNA downstream 9432 22978602 ~ 23100083 (+) False dachd
XM_039818138.1 mRNA downstream 9432 22978602 ~ 23100083 (+) False dachd
XM_039818139.1 mRNA downstream 9432 22978602 ~ 23100083 (+) False dachd
XM_039818134.1 mRNA downstream 9432 22978602 ~ 23100083 (+) False dachd
TU169945 other upstream 151524 22807193 ~ 22815102 (+) True G126363
XR_005641000.1 other upstream 1277824 21655131 ~ 21688802 (+) False LOC120569986
XR_005641085.1 other upstream 1339174 21619348 ~ 21627452 (+) False sox1a
TU169142 other upstream 2101184 20860152 ~ 20865442 (+) True G125757
TU169140 other upstream 2107716 20853089 ~ 20858910 (+) True mpc2b
XR_005641105.1 other downstream 1898151 24867321 ~ 24867439 (+) True LOC120570682
TU170822 other downstream 2660937 25630107 ~ 25658726 (+) False cacnb4a
TU170823 other downstream 2670636 25639806 ~ 25658726 (+) False cacnb4a
TU171128 other downstream 3147818 26116988 ~ 26129879 (+) True G127165
TU171231 other downstream 3442341 26411511 ~ 26417667 (+) False mphosph8

Expression Profile