RNA id: XM_039817666.1


Basic Information

Item Value
RNA id XM_039817666.1
length 5325
RNA type mRNA
GC content 0.41
exon number 6
gene id klf12b
representative False

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 22914201 ~ 22960754 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCGGGCTGACTGAGAGCGGACGCGTCGGAAACCTCCCCGGAGGGGCCCCGTGTAATTCGATGCATGCTGTTAAAGCTTAGAGTATATTGTCTTCCCTTTGCTTATGAAGCCTCCACCCACCGGCCCACCCTACATTTAGCGGATCATGTGACTCGGGGCAGCCTAAGAAACAGGATGTTAATGCTTGACGGAATGCCTGCAGTCCGAGTCAAAGCTGAGCCCCTGGAATCGGAACAAGGGTCACCTAAAGTGCGCCCTTACTCTGCAATGGACGGCGTTCCCTTCTTCCTCAGCAGAGTTAAACACGAACCTCCAGAAGACCTGCTCGCTAACGACCTGCACTTCCACACACAGACCGAGCCTGTCGACCTGTCAATCAACAAACCccgcccctcctcttcatcaacCACCCCTACCACCACCTCGTCATCCTCCCCTCTCAGATACGCTTTCTCCCCGTCTTCTTTATCGtcgtcatcctcctcctcctcctcctctccatcgGTTATCACCTCAGCCTCATCGGTGCTAACCCCTGGAACCGGGCTGAGAGGTCAGCCGTAtttgcacattctgcactcTGTGCCGCCACCTCCATCCAGCCCGTTGAGCCTGCAGGGAGCGGGGAAGCTTGCCAGCCATGTTCACCGCATCCCTGTCGTGGTACAGTCACTACCACTCATGTACACCACTGCCGTTCGATCACCCTCCAGCCTCAACAACGCCATCATGCTACCTCTGCTGGACGAGGTGAAAAACCATGGCAAAGCACACATAGACCCCAACGGCCTGTCGCCAAGGCAGATCAAGAGTGACAGCGATGACGACGACCTGCCAAACGTGACCTTGGATAGTGTTAATGAGACCGGCTCCACTGCGCTGTCTATAGCCCGCGCCGTACAAGATTCCATGTCCCCGTTCAGTATTGACAGCATACGGCGCCCCCGGAGGTCAGAGTCACCAGATTCCAAAAAGAGAAGAATTCACAGATGTGACTTTGAGGGCTGCAATAAGGTGTACACCAAAAGCTCACATTTAAAAGCACACCGGAGGACACATACAGGGGAAAAGCCATACAAATGCACCTGGGACGGCTGCACGTGGAAGTTTGCCCGCTCTGATGAGCTGACGAGGCATTACAGAAAACACACAGGGGTGAAGCCCTTCAAGTGTGCAGACTGTGACCGCAGCTTCTCCAGATCTGACCACTTGGCCCTGCACCGACGGAGACACATGCTGGTGTGAATAAGATGGAGAgcgataaagagagagagagagagagagagagagagagagagagagagagagagagcgatcaAAAGAACagacccacacaaacacaggcagcCGGGGGAGCGGGATCTCCCTATGAATGTTTTTCAGCTGGCCtggacacgcacacatacacatacatacacacacacacacacacacacacacacacacacacacactctctcatccGTCATAAGGAGAGAAGATGGAGAGGTGCACAGAGCTTGTTGAGCACAAAACAGGGTCACTTTTGGATCCTCTTTGGGTTGGAAGGAATAGACGGCAGGATCTGTTATTGTTATTCTTTGGAGTATAATAGGGAACTGTCTTTTACAGCACTGTTTGTAAATGTTTCACTTTGATTTTTAAAGATAAACTCGCACTCTTtatttggacaaaaaaaaatatatataatgcaATCGCAACAGTCTTCTTTTGGTATCTTTCTTTTCATCATTGTTAAAATGGCTGCTTTTCCAGCACTCATAATGTGAAAGACCCCAATTAATGGAATGGATTTCCTCTGTGAGCAGAAAGAAGTTAGGCCTGGACTAGATCACAGGAAAGGACTTGGGCCTAGTTGGAGTTACAGACAGTATTGTTGCGCCGTGTCTCCATTTGAGTCTGATTTGTGACCAGCAGAGGGCGGCATTTAATCACAGATGGTTTCCTTTGCCTCCtggcgcctgctgttatagcCGAGGCATCCCATATAGAAGCTCAAAGAGGGCTGGACTTTCACCTGTCTCGCAGCCAGCAAACGGCAAATGACATTAACTCAAATAGCCACAGCCTGAATGGATTAACCTCATCTACACGTCTACTTTTACAGATATTCATTGCTTTATttcaaacaattaaaactgGACAAGCACATCTTCACACCAGCAAAGAAACACACCGTTTATGACCCACTCACAGGGCCGGACAACCCCAAATCTCATCAGTGCTATTCTTTATGTTGAGCCTCTTgaaagcatttctttaaaaaaaaaaaaatatttggtgGAATTTGTGCTGTGATTAGCAATCAGTAAAGTGCAATCTTAAAGGATAAATATACTTTCAGTATGACAATGTTTTGTTTATTGAatcttgctttttttctttttaaatgcctGCTTATTGCTTATGTTTGACTCAGAAAAATACAACCCCTCATGTACAGTAAACTTTGAAACAATCAGAGGAGATTTCTagtatgtgaagaaaaaaaattagagGCACCTTACAGACTCATGCTTTTTATTCTGTCCCGATtgatctgttttattttttattattcagctCTGTTTTCTCAGCTGGGTTTGACAGTGAAAGGAACTTGCGTTGTGGTTTTGCACAACGGCACTTGAACCATGAGCTGAAACTGACATCAGCTGCAGTGTTACAGGGATAGTGTGCTACCTGATGTACAATACAGAAGAGCAATACATACTGAACAAATTGATGAGAAGGAATGCCAACCTCCTCGTTGTTCTGTTTGCTGATGTCAATACAGGAGGAGAAGTTTCAAACTGGGCCAACTCCTCACTCTGTACCATGACTCCATCTGTTTGATTGGTTCGTAGCTCCAGCACAAGGCTCCACTCTGATGTGTCTCAGTTAGGGAGTTACTCcgaatcattttattttgttttgtttgtctcgAATACAGAAAGTCACTTGAAATGTTTCACCTCAGACCAGATATATGATGTGATTTACCTGAGATTTGGCTACATATAATGCTTAAAAAAATTGAGGAATcacatatgcatacatacaaagtacatagaattaaaacaatacatatgcatgtacagtacatacatgaaTTAATTATGTAAGTACAGTAAGACTACGTTTTAGATGCAGTTACTGGCAGAAATATCTTACCTCTTAGAGAACATCACTTAACCTTAATCAggaaatttaattaaaaagtttttttatagTCATAATGACAGATATGTTTCCAAGTATTTTCAATAATCTTCATGCTGTGTAAGACCTGCACACATAAACTCAGAGCATCAGGCCATCCCATATTATTTGATAGTGCTGCTAAATGCATTTATTGGACCGAAGCCAGTAAAAAGAAATGGCAACCTTTTTGATAATAGCACCTTGAaaaccactcactcacacactcatgcacatgtgcacacacacctgcacacttTGCATTGAACATCCTCACTTTCAGTAAAGTAGCCAAATCCAGGAAGTCATTTCCACACATGCACCCAATGTATGTGATACCCATTTGATGTAACGGAGAATGATAATGTATGTTATCATTATTTATGTATATTCTTTGCGCACATGTCATTATGCCCAGTTGTATTATCATTTTGGCAAAAGCATATCAGCACCTTGTTTGTTTATTAGTATGatttcaaattattttatttcagatgTCAATTTATAAACAATAATCATGATCATATTTTATCCTCCATATAATGTATAAGAGCATTTTATTATTGAGGGGCCCTTCATCTTTTCATACAAGTCTTTTTCTTCTGTAAAAAGGATCTTTTGAAATGTTGTAATATATGTGATAGTGAAGATAAAAGTTATTACAAAGTTCTACAGCCTGTATATACATTTGAAAAATAGGGCTTTTGATTAGTAGAtgcagaaaatacatttatacatGTAAAGTCTTTTTTCAGAGACTGTAATTTATCTAATTTGATATACAGTGAAATGGGGCTAATGGTATCCATCATGTAAATTTTCATATGTGATGTTATAGAACAGTTTGCTTTCTTTGGTTTGTGGTTAAATAAGTTCATGATCAAATCATTTTTATTCCCAAGGCTGAACCAGTGTTTGCTATATTCAACAAGTTATTTATATACATTGACCATATTAAGGTACTCAATTCCCTATGTTGCTATTTTGCTATACCCGGACAAGAAATTACATTGATCAAGCACATATCAACAACATGTGTACTCTCGTATTCAGTTATGACGTTGCATGCCTTAATACACCAGTTTTTGCTAGATTCAATTAGACTTGAATATGGTGTCTCCACAGGACAGAGTGTATTATAATTCCCTTCAGCATCGCTTTCCTcattttaaaagcataattttgTTACGGTAACCAGGGTCAAAGTTATGCAATAATAATGAATAGTGCctcatattgcaaacttgtaatATCAACTGCTCTGTGCAGAGTTTGGATTTCAACATGTTTGttcaaattaataaatatcAAATGGGAAACCAtacattttgaagaaaaaaaaaagcacagataACATTATGCAAGTCGGACCTTTAATGTTTAACTTTCTTTTCGCACTGAGCCTTATGTcatgtgtcaaatgcagcatcCTCCCATACCACTTTCACAGGCTGTTTATAGCTTGTGTTATTCCTTTGCTTGCAATAAGTCACTTCCTCTAAGTTGGAACAAAAGTGAGTTACAATGATGTTTCATACAATGGTGTTCATCACAGGAACTCAACATGGTAGATAATGAGGAATCTTGTGTCTGGCATTCCGGCTGTAGAGCGACCCCTTTGTTAATGAATTCTGGTCATACAATTCTCTTCAGTTCAATATCTATTTTACTTTCTGTGTAACATCTGCTTTTGATTTCCTGGTTTTGAAAATTTAAGTAGTAAAGCCAATGCCTATGTTTCAAGTTTGCTGATATTACGTACAGTAATCGTTGTTCCTGTATTTATGTAAAGTGAGTGTAGTGTAAATATATTCAGATCTTTTCATTCTtaccgttaaaaaaaaaaaaagttgtgataTTGCTCAGCATTGCTTCAAAAGGGAGATTCTACTCATGGAATTCCACATCTGTAAAAGAAATTTTTAATCCTGATATTTTTCAAAACTTCGAGAACAGgtgtcctttttttctgttacgctttttcttttcttcaagaGTTGTTTAAGTATCCAGTCagtgtttttgcctttttctctgtatttttcaTATGGATGGAGCTGTGAAATTAAAATAAGTTCaaacatatacatgtatattaATATGAATGGAGGCATGAAGGTTAATAAAGTTGCATTTTGTATGTAA

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU169937 lncRNA upstream 115889 22797901 ~ 22798312 (+) True G126358
TU169931 lncRNA upstream 143281 22770710 ~ 22770920 (+) True G126352
TU169856 lncRNA upstream 175548 22734060 ~ 22738653 (+) False fbxl3a
TU169843 lncRNA upstream 255309 22657517 ~ 22658892 (+) True G126290
TU169833 lncRNA upstream 274439 22639470 ~ 22639762 (+) True G126280
XR_005640940.1 lncRNA downstream 5872 22966626 ~ 22969170 (+) True LOC120569671
XR_005640941.1 lncRNA downstream 5872 22966626 ~ 22969170 (+) False LOC120569671
TU170077 lncRNA downstream 132544 23093298 ~ 23099790 (+) False dachd
TU170121 lncRNA downstream 272113 23232867 ~ 23236823 (+) True G126439
TU170130 lncRNA downstream 391823 23352577 ~ 23352820 (+) True G126447
XM_039817696.1 mRNA upstream 26813 22856950 ~ 22887388 (+) True tbc1d4
XM_039817693.1 mRNA upstream 26813 22869056 ~ 22887388 (+) False tbc1d4
XM_039817694.1 mRNA upstream 26813 22869056 ~ 22887388 (+) False tbc1d4
XM_039817695.1 mRNA upstream 26813 22872367 ~ 22887388 (+) False tbc1d4
XM_039817698.1 mRNA upstream 58658 22850941 ~ 22855543 (+) True commd6
XM_039818131.1 mRNA downstream 17848 22978602 ~ 23100083 (+) False dachd
XM_039818136.1 mRNA downstream 17848 22978602 ~ 23100083 (+) False dachd
XM_039818138.1 mRNA downstream 17848 22978602 ~ 23100083 (+) False dachd
XM_039818139.1 mRNA downstream 17848 22978602 ~ 23100083 (+) False dachd
XM_039818134.1 mRNA downstream 17848 22978602 ~ 23100083 (+) False dachd
TU169945 other upstream 99099 22807193 ~ 22815102 (+) True G126363
XR_005641000.1 other upstream 1225399 21655131 ~ 21688802 (+) False LOC120569986
XR_005641085.1 other upstream 1286749 21619348 ~ 21627452 (+) False sox1a
TU169142 other upstream 2048759 20860152 ~ 20865442 (+) True G125757
TU169140 other upstream 2055291 20853089 ~ 20858910 (+) True mpc2b
XR_005641105.1 other downstream 1906567 24867321 ~ 24867439 (+) True LOC120570682
TU170822 other downstream 2669353 25630107 ~ 25658726 (+) False cacnb4a
TU170823 other downstream 2679052 25639806 ~ 25658726 (+) False cacnb4a
TU171128 other downstream 3156234 26116988 ~ 26129879 (+) True G127165
TU171231 other downstream 3450757 26411511 ~ 26417667 (+) False mphosph8

Expression Profile