RNA id: XM_039817698.1


Basic Information

Item Value
RNA id XM_039817698.1
length 1192
RNA type mRNA
GC content 0.43
exon number 7
gene id commd6
representative True

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 22850941 ~ 22855543 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTACGATGGTTACGATCCGCCCGTAAACAGATAGAAGAAGATTCACTGCAAAGACAGAAGGTTCTCTGCCAATAAAGTCGGTCTTATTATACATCCGTCATAAAGTCACCCAATTTGTCACTAGGAggtttgaaaataataataatatagatttgatatataagtcgctaAAGGGGTCTTAAGCGTTGCCAAGCGAGCAAGTCCCTAAATAGAGAACACTGCCAAGCCAGACTGAGAGAAGATGCCAGCAGCAGAGGAATCGCATGGTGTCAACAAAGTTGTGGACAACATCTGTAAGCTTTCTCCAGATCTTTTGGCTGAAGCATGTCAGCACATTCTGATTTATCTTCAAGGACAAACTAAAGGAGTAGATTCAGCTGAAATTTCTCATAAATTTCAAAGAGCTGGAGTCAGACTTGACCATGAAGCTCTACAGAACATTATCAGATTTCTCCTGTTAACATTCAGGTCAGCTGGGAAGAGCAACTTCTCTGGGGATGACCTTGTGTCGAGGCTGGAGGAAGGCAGTAATAAGTGGCCCAAAGCTTCCCTTCAGGTGTTGCACAGGTTGTGGAGTGAACATGGTGCATTAGTCCATGCTCAGCAGGAGGTCCAGGCCATGCTCAGCATCAGCCAGTTAGTGGACATGCAGTGGAAGCTCGGCATGGCCGTGAGCTCCGACACCTGCCGATCTCTCAACTCCCCATACGTGTCTCTACTGCTAAAGATCGTTGAGCCCTCTGGGCAGATTTGTCAGAGGTCTTTTGAAATGACCATTCCACAGTTCCAGAACTTTCACAAGCAGTTCAAGGAGATGGCAGCCGTTATGGAGACTGTGTGATGGTTGCAAGTTCACCTAAGTGCTTGTCGAAATGACACTCCAGTTAACTTGTTACCCAACCGAAGAACTGCTTGACACAGGtgtgtgtcttctggctgttaAACATGTGGATACCAATTATTGCAAATGTCAATTGTCTGCTTTtcgctttgcttttttttttttttttactttacagattGCATAAGCTCCTAAATGATTTACTGAACAGTCCTGGGGCTTTTTGTTAACTTCTGAATTATGAGGACTTTTGCCATGTTTTTTCCCCTGTTAATACTGAAATGTATACTGTGTGGTTTGATGCCACACAACAATGATGCAATAACAATCATTAAATGTAAACCTCCATTG

Function

GO: NA

KEGG:

id description
K22562 COMMD6; COMM domain containing 6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU169937 lncRNA upstream 52629 22797901 ~ 22798312 (+) True G126358
TU169931 lncRNA upstream 80021 22770710 ~ 22770920 (+) True G126352
TU169856 lncRNA upstream 112288 22734060 ~ 22738653 (+) False fbxl3a
TU169843 lncRNA upstream 192049 22657517 ~ 22658892 (+) True G126290
TU169833 lncRNA upstream 211179 22639470 ~ 22639762 (+) True G126280
XR_005640940.1 lncRNA downstream 111083 22966626 ~ 22969170 (+) True LOC120569671
XR_005640941.1 lncRNA downstream 111083 22966626 ~ 22969170 (+) False LOC120569671
TU170077 lncRNA downstream 237755 23093298 ~ 23099790 (+) False dachd
TU170121 lncRNA downstream 377324 23232867 ~ 23236823 (+) True G126439
TU170130 lncRNA downstream 497034 23352577 ~ 23352820 (+) True G126447
XM_039817088.1 mRNA upstream 96337 22753105 ~ 22754604 (+) True kctd12.1
XM_039817904.1 mRNA upstream 103423 22744460 ~ 22747518 (+) True zgc:162944
XM_039817900.1 mRNA upstream 112292 22730923 ~ 22738649 (+) False fbxl3a
XM_039817901.1 mRNA upstream 112292 22730962 ~ 22738649 (+) True fbxl3a
XM_039817887.1 mRNA upstream 120518 22668306 ~ 22730423 (+) False mycbp2
XM_039817696.1 mRNA downstream 1407 22856950 ~ 22887388 (+) True tbc1d4
XM_039817693.1 mRNA downstream 13513 22869056 ~ 22887388 (+) False tbc1d4
XM_039817694.1 mRNA downstream 13513 22869056 ~ 22887388 (+) False tbc1d4
XM_039817695.1 mRNA downstream 16824 22872367 ~ 22887388 (+) False tbc1d4
XM_039817666.1 mRNA downstream 58658 22914201 ~ 22960754 (+) False klf12b
TU169945 other upstream 35839 22807193 ~ 22815102 (+) True G126363
XR_005641000.1 other upstream 1162139 21655131 ~ 21688802 (+) False LOC120569986
XR_005641085.1 other upstream 1223489 21619348 ~ 21627452 (+) False sox1a
TU169142 other upstream 1985499 20860152 ~ 20865442 (+) True G125757
TU169140 other upstream 1992031 20853089 ~ 20858910 (+) True mpc2b
XR_005641105.1 other downstream 2011778 24867321 ~ 24867439 (+) True LOC120570682
TU170822 other downstream 2774564 25630107 ~ 25658726 (+) False cacnb4a
TU170823 other downstream 2784263 25639806 ~ 25658726 (+) False cacnb4a
TU171128 other downstream 3261445 26116988 ~ 26129879 (+) True G127165
TU171231 other downstream 3555968 26411511 ~ 26417667 (+) False mphosph8

Expression Profile