RNA id: XM_039817694.1


Basic Information

Item Value
RNA id XM_039817694.1
length 4849
RNA type mRNA
GC content 0.48
exon number 16
gene id tbc1d4
representative False

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 22856950 ~ 22887388 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAAGCAAAGGCCTTCACTACAGCAGCCGCCTTACAGAGCAACAAGACCGAGATCCAGCTGTGTGAAGCCTGCCCCATGCATGGCCTGCACAAGCTCTGCGAGCGGATTGAAGGTCTCTACCCACCCCGAGCAAAGCTAGCTATCCAAAAATATCTCTCCCAGCTGACTGACAATGAGCAGGCTGAGATCTTTGAGCGAGTTCAGAAATTGAAGCCCGGTTCAGACCAAGAGGAGAATGAGCTGGTGATTCTCCATCTGAGACAGCTCTGTGGAACCAAACAGAAGTCCCACCTCCACATCGGAGAGGCACCGCAGAATTCAGCAAACAGCTCATCCGCGGGAGACGGCACCGGCACCAGCAGTCGCTTTAAGCTTGATATTCTTAAGAATAAAGCACGCACCTCCCTTACCAGCTCCCTGGAGAACATCTTTTCAAGGGGTGCCAGCCGGATGCGGGGCCGCTTGGGAAGCATGGGAAGCATCAGCGGTTTTGAAAGACAAGATGAGGAATCTCCCGGTCACTCTCCTCCAGGTTCCCCTCCTGCTTTCCCTGACGACGACCCGGAAGGCGGCCTTCATTTCCGCCGGCGTGCCCACACTTTTAGCCATCCACCTGTAAAGAAACGCATCTCCTTCGAGGGCCAGCTGGCCAGCCAGAGCAAACAGGCTCCACTGCGCAGACAACAGTCTGTTAACCCAGAACTGCTGCAGGGAAGCAATGGGGAAGGCAGGAAGAGGACCCTGTCGGGCTGCAGCAGTGACTCAGTGAGTCTCCCTCCGACCCCACGCAGGGTCTCCTGGAGACAGAAGATCTTCCTGAGGGTCGCTTCACCTATGAACAAGccgtctgcatcgatgcagcacCCAGACCACTCTGATGGGAGGGAGCTGTTACCTCTCTCTCCCCGTGGCCTGGATCCTTTCGGGCGTCTGCTTCCACCAGCAGGTGACCCCCTGTCTGGGGAGAGGCCTAAGAGGACGGGGGCTGACTACCGGGCCCTCTGGAAGACTGCCATCCACCAGCAGATCCTTCTTCTGCGCATGGAAAAGGAGAACCAGAGACTGGAGGCGAGCAGGGATGAGCTGCACATCCGCAAGATAAAGCTGAACTACCAGGAAGTGGGCCAGTGCTCGAAAGAGGCGCAGGCATTGTGGGAGAGAAAACTGACAGCCCCGGGCAGGACAACAGTCCCACAGGACAAGGAGGAGATGTATCGTGCACTCTGCCAAgGTGTTCCCAAGAGCAGGCGTGGGGAGGTCTGGTTGCTCCTGTCCCATCAGCACCGGCTGCGTCACAGGCTGCCCCAGCGTCAGCAAGCCCCGGACACCCCCTACCATGACCTGCTCAAGCAGCTCACCGCACAGCAGCATTCTATTCTGGTGGATCTAGGCCGGACCTTCCCCACCCACCAGTACTTCTCAGCCCAGCTGGGCGCAGGGCAACTTTCCCTCTACAACCTCCTGAAAGCCTATTCTCTGCTGGATACAGAGGTTGGCTACTGCCAGGGTATCAGCTTTGTGGCTggagtgctgctgctgcacatgagcgAAGAACAGGCCTTTGACATGCTGAAGTTCCTCATGTATGACCTCGGCGTCAGGCAGCAGTTCAGACCTGACATGgtctctctgcagGTTCAGATGTACCAGCTCTCCAGACTGTTACACGACTACCATCGCGAGTTGTACAATCACTTCGAGGAGCACGAGATCTGCCCGAGCCTCTACGCAGCGCCGTGGTTCCTCACTCTCTTCGCCTCACAGTTCCCCCTCAACTTTGTGTCCCGCGTctttgattttgtatTTGTGCAAGGGACCGGGGCCATCTTTAAAGTGGCCCTCTGTCTGCTGAGCAACCATGAGGGGGAGATAGTGGAGTGTGACACCTTTGAGAGCATTGTGGACTATCTGAAAACTACACTTCCCGCCCTCACTCAGACTCAGATGGAGCAGACCATTGCGAAGGTAATGGAGATGGACATCTCCAAGCAGCTGCATGCGTACGAGGTGGAGTACCATGTCCTGCAGGATGAGATGTTGGATGCCGGGCCGCTGCCTGATGACTCTGACCGGCTCGACAAACTTGAAAAGACCAATGTGCAGTTAAAGAAACAGAACATGGATCTGCTGGAAAAACTTCAGGCTGCACGGCAGAAGATTCAGACACTGGAGACGAGTGTAGAGAACTTCCTTTCTCGGGAGAGCAAAATGAAGCACATGATTCGCTCTCTGGAGCAGGAGAGGGCAGCTTACCAGAAGACCATTGAACGCATGCGCTCATGCCTTCCCCCTGACGCCCTGACAGATGTGGAGATGACCCAGATCAAAACAGGACCCAACGGGAAAGCCAAAACTGCAGCCAAGAAGCCCTGATGGCAACCAGGGGGCTGGCTGCTCTGGACAGATGCACAGGCAGAGACTGAAGTGAACAAATGGAGCCTGCTTTAGCGGAAGGCTGCTGAGCTCCACAGCTATTGTTGTACTGCTGCACAAGAGTAGCAGGGTTTTGTAAATGTGTGACGTGGACTTAAGATGTGCAGACTGTATGGGAAATCTACATGGTATTCGTCAGCTTATAGCCGAGCAGTGGGAGGATGGTTTCAGTTATATTAGCAAACCGACTGTTCTATCAGTGCATCAAAGCTGCTGTTCTGTCTGATCTGCTTCACTGCCAGTTTGAAGGTGAAATCAAGATGCACTTCCTTATTCAGATCTTTTTTGTAATCACGGGGGAATTTTCTAGATTGACACAAGAGAGAAATACGTCTGCCTCTGCTAATCTTTTTTGAGCACTGCCTTGATGTAGTTACTATCAGTCTCTGTAGCACCACAAAAGCATTGAACAGAAGTTGCCTGTTAGCAAACAATCCTTTGGACTTCAGGTTCAACTTATAGCCATTACCAGTGTGCATGATCCTGGAGTTGATGCcccattgtttttgttgtttttgaacTTGTGTCTGTGATGGAAACTCTGCCTCAGAGTAATCACATTGCTTTGTCATTTCCTTGTATTCACTTGAAATGTGTGAATGCAATGTCTCTCTAAAGATCATTGTGATAACATTCTGTTTTTCACCGCAGAGACATCTGACTGCCTGTCTGCCATATTAGGCTTTCAATTTCGGCAGACATATTTGGTATCTTGTTGCTCATCCCCCTGCACCGCACCACTGCCTTCACGTGAGAGATCTCTAAAACATGCACTTGCTGCTTTTTAAGGAGGAAGTGTTTCTTCCAAAGCTCAGGCAGGATGTGAGGTCGTCTGCCTTCTCAGTTTCCTGTGTGACTGACCGCGGTGTTGCCTCGTTTAAGCAACACGTTCAGACACTGAGGCAGAGTTTAAGAACCCCAGGAGGCGCCGAAAAGAGGAGTGATCTGAATGTACACCACATGCTTCTGTTCCAAAAGTTTGTATgacatttatgtttttgtcagcCAGAGGTTTGACAAAAGTAGCAACACCCTCTCTTCCTGTATTTCTGGAAGGTGGGTCTACAAGCAGCTAGTGTTGTTTGGCTAAGGAATTCAAGACAACACATGTTTAGGTGAGTAGAGAGACCGCAAAGAAAATAAGAAGAACCTAATCAGTTTCCTTTTGAGTGGGGGAGTCTCCCCTGATGCTGGgtaatatgtacagtatatgtgtacacacacacacgctcttgCATACAAACAAGCTGTGCAGTGAACTGTCTGACTGTATGGGCAGACAGTTTAAATGAATTCAATGAGGGTTCCCTGGCTCTCTCATTAGTTTTGTTTTATCCCACCTCCTCGTCTGACTCACCATCGCCAGTTCTTATTGAAAATAAAACCGACCTGGGCTTGACTCCGCTTTCATATAGCACCCTTACATTGAAACCAAGGTGATGAAAAGTACTTACTAACAGCGTCTGTCAGTCCTTCTGTCCTTGGTGACATGTTGTGGTGACACATTTGTGTCTGTTTCAGTGCAAAGTTTTTATTCTCAAAATGTAGTCCAAGCAGACATATCCTTTGGCATACAATGCAATATGTTCAGCACTCCTGGGTCTTTGCATACACCCAGAGACTTGCTTACCTTTGCTAAGTCACAGGAGCTGCAGGAATTCTGTTCTTGTTGTAATTGAGGTGATATTGTAAAGGTTTGCACCAAACCTTTTATAAATAGTAGAGAAATGTTCATCTCTGAACAGCAGTGGTTCTCTCAACCTTTCAGAAAGTGAAACATATCAAACAACTTATTCCGAAATCTGTTAAAGGATACGTAGGATACAGTCCTACACAGCTTTCCTGCCTCTTTTGCTCAGCTACAGTATTTTTGCATTATATAAATTGACAATTGAACCAAAGATGTGGTTGCTtttcaaaatgaatgaatgaattcatcCAAAATGCTGTGATGTATTATGTGAAATGTGATAACTTTTTTGTCACTACACCTTTTCAGCTTTCTTTAGGTTTGTACTAAGACAAAAGCTTAAAAAAGAAACCAAATATTGGTAATAAAAACTTCgacacttaaaaaaagaaggaaaaaaaaaagaccattgGCAGACTTTACTCCTCATTCTCATCTTATTCCTTTTgtgccaaaaataaataatggtcTTTATTCTCCATTCATCAGAGATATGAGACCATTTTGTCAATAATCTAATGTTAAGCACATCCTTGTGGTTAGCAAAAGGTCTTTATTTTACCGGTGCTCTGAGTCCTCCTGACTACTAAATAAATAGTGCTTGTATCACTGTGTTGTAAGGAAAGACACTAAATAATAGATGGATTGTTTTTCTGTCAACATCAGGGctacacaaaaacaaagacactgTCATGAATTCTTCAATAAACTTCACCTTGCCTTGTT

Function

GO:      GO:0005097,GO:0032851

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU169937 lncRNA upstream 70744 22797901 ~ 22798312 (+) True G126358
TU169931 lncRNA upstream 98136 22770710 ~ 22770920 (+) True G126352
TU169856 lncRNA upstream 130403 22734060 ~ 22738653 (+) False fbxl3a
TU169843 lncRNA upstream 210164 22657517 ~ 22658892 (+) True G126290
TU169833 lncRNA upstream 229294 22639470 ~ 22639762 (+) True G126280
XR_005640940.1 lncRNA downstream 79238 22966626 ~ 22969170 (+) True LOC120569671
XR_005640941.1 lncRNA downstream 79238 22966626 ~ 22969170 (+) False LOC120569671
TU170077 lncRNA downstream 205910 23093298 ~ 23099790 (+) False dachd
TU170121 lncRNA downstream 345479 23232867 ~ 23236823 (+) True G126439
TU170130 lncRNA downstream 465189 23352577 ~ 23352820 (+) True G126447
XM_039817698.1 mRNA upstream 13513 22850941 ~ 22855543 (+) True commd6
XM_039817088.1 mRNA upstream 114452 22753105 ~ 22754604 (+) True kctd12.1
XM_039817904.1 mRNA upstream 121538 22744460 ~ 22747518 (+) True zgc:162944
XM_039817900.1 mRNA upstream 130407 22730923 ~ 22738649 (+) False fbxl3a
XM_039817666.1 mRNA downstream 26813 22914201 ~ 22960754 (+) False klf12b
XM_039817669.1 mRNA downstream 26990 22914378 ~ 22960754 (+) True klf12b
XM_039817667.1 mRNA downstream 26990 22914378 ~ 22960754 (+) False klf12b
XM_039817668.1 mRNA downstream 32558 22919946 ~ 22960754 (+) False klf12b
XM_039817665.1 mRNA downstream 43858 22931246 ~ 22960754 (+) False klf12b
TU169945 other upstream 53954 22807193 ~ 22815102 (+) True G126363
XR_005641000.1 other upstream 1180254 21655131 ~ 21688802 (+) False LOC120569986
XR_005641085.1 other upstream 1241604 21619348 ~ 21627452 (+) False sox1a
TU169142 other upstream 2003614 20860152 ~ 20865442 (+) True G125757
TU169140 other upstream 2010146 20853089 ~ 20858910 (+) True mpc2b
XR_005641105.1 other downstream 1979933 24867321 ~ 24867439 (+) True LOC120570682
TU170822 other downstream 2742719 25630107 ~ 25658726 (+) False cacnb4a
TU170823 other downstream 2752418 25639806 ~ 25658726 (+) False cacnb4a
TU171128 other downstream 3229600 26116988 ~ 26129879 (+) True G127165
TU171231 other downstream 3524123 26411511 ~ 26417667 (+) False mphosph8

Expression Profile