RNA id: XM_039818761.1


Basic Information

Item Value
RNA id XM_039818761.1
length 3091
RNA type mRNA
GC content 0.47
exon number 8
gene id clybl
representative True

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 23159965 ~ 23222241 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTGCTGCTTGCTCTGTTTCTACGTCATCGAAGAAAATATGGCGGCGCACATAACCAGAGCTGTGAAACGAATTCTTCCACAGGAGAGCGGTTGGCTCCTGCCCACAGCCTGGCAGTTGTATACCAAAGCATGGCGTTATCACCATCACTCGGCAGGCCCCTCGCTGCGCTACATACCCCGCAGGGCGGTTCTCTACTGCCCTGGCAATGATGAGCGAAAATTGAGGAAACTAGCCACGCTGGATGTCGACTGTGCGGTCTTGGACTGTGAGGATGGTGTGGCCCTCAGCAAAAAGACAGAGGCCAGGGAGACCATTCCCAGGATGTTAGCGGAACTGGACCTGGGCCGGACGGAGAAGTGTGTGAGGGTGAACTCGGTGTCCAGTGGCTTAGCGGAGGCTGACCTGCAGGTCATCCTGCAGGCTGAGGTTCTCCCTCCTGCCATCATGTTGCCCAAAGTGGAGGACATGCAGGAGGTACAGTGGTTTGTTGACAGGTTTCAGCACAACTTGAAAGGGCGGGCACTGACAGAACCCATTCGTCTGGTCACCTTTGTGGAAACCGCTGTGGGCCTGCTTAATTTTAAGGTGGTTTGTGAGGAAATCCGTCGACTTGCTCCCAGCGCCGGTCTACACCATGACGGCGTAGTGTTTGGCTCTGATGACTTCTGTGCCAGCATAGGTGCCACACGGACTAAAGATGCCAGGGAGCTCCTTTATGCAAGGCAGAAGGTGGTTGTGACCACCAAAGCGTTTGGTCTGCAGGCTATTGACCTGGTCTACATTGACTACAAAGATGTGGAGGGGCTGAGGCGACAGGCCAGAGAGGGAGCTCTCATGGGCTTTACAGgTAAGCAGGTTATCCACCCAGGGCAGATCCAGGCTGTGCAGGAAGAGTTCTCCCCCAGTCAAGAGAGGGTCCAGTGGGCCAAAGAGCTCATTGCTGCTTTTGACCAACACCAAAAGGAGGGAAAGGGTGCGTTCACCTTCCGCGGCAGCATGATTGACATGCCCTCGGTGAAGCAGGCACAGAACATCATAACGCTCTCCGTCGTGGTGCCAGAGAAATAACACGACCGGTGGGAAGAAACGGGAGGAACCGCACAACTAAACCCTGACAAGAGAAGGAAACTGGAACTGTTGCAGGTTTCATGACAAAAATAGCACTTCTTGTGAAAAAAGCCTTGTGAACTATGTTGCCTGACATAAGTGGATGGTGgaaattgtatttttaatttaagtttttaatAATTGTTGAAAGATGTTGATTAAATGACTTTGTTTGTGGTAGCAGTTGCAGTGAAGATTTACTTTTGCTGCGATGGTCCAGTTTCGTTGAGGATGATTCTGACAATATGAAATCTGCACATAGCGAGTAGCAGCAGCAGATATCTGCCTCTCAACGGAGTGTTGACGACTACTGCCCTGTGTGGCCACTTTCTTGGCACactctgcagtgtgtgtgcgcCATCATGTCATTCTCCCGTGTGTGTGCCCATGCCTCCCATCTCTCCTAGGTCATGATGAATGCTCTCCCATCTCCACGGTCCAGGCAGCTGGGCGAAAGggtaaacaaacacaacaagccactgTTGTGGATCTATTCATTAGGCCCCAGTCTTCCAGTCAGGCCTCAGCCCCCTGCCCAGGGCCTGACTCACAAACATCAAAGTCTTTctcgctttaaaaaaaaaacacagatggaAGTGCGTAAACTCGCGATTTAGCTTTTTTTGTGTCGGTCTCCTTAGTAAAGACATGCAGCTCGCCCTGTGGCAGCTGTGAGCCTGTGGTCTTGATGGAGAAGGCGTGTGGCGTCAGACACACCATGACctgtacaaaaaataaacactgcATACATGCACATGCTGCGGCAGTTTTCATTACCTGATCTCTCATTTAACACAAAGAGCTAAACTTGGATGTTCAGCTATATTGTTTCTAGATTAGAttcacagtttgtttgttttttatcagcatttaaagaaaaaaaaaaacatttcctctCTTTGATAAAAATGAACTCCTAAACAAGTTCAGTAAAGTCGTTTGTCGTGCTGTCAGAAATAAAAGTACAATGGGGCTCTGCGGAGCGCTTGTGAACGTCTGACTTCCAGAGACAGTGAAGTGGGTGTGATCTTCGAGTGAAACAGATTAGTGGCCATGTTGCTCCAGCAGACCAGGACCGAGGCTTTGTCTCTCTGACTGTGGATGGGAGGATAATTGCGGGGGTGTTGAATGGTTAATAGTGCCATTGGTGACCATGGTAATGAAAGGCACCATACCTCCCCTACCCCACCTCATCCActcatctatctctctctctctcgccctccctctctctctctctctctcgctctagTACTGTATGATCTATTGTGTCTGGGGCAGGTCTGTGGTCTTTGCCAGGCCAGGCCAGACAAAAAGATCGAAACCACTCCTGTGCCCAGCCAAAGACCCGAACAGTAAGCTGTCTCTTTGGCATTTGGCCACATATTTCCCTCACCCCTGGCTCACTTTTTCTGTCGGGAATTCACATGcagcttgtttgtttgttttcacccAATCTACCATTGTACCCTGAGGTTGGTGGACAAAACCAATAATACGTATGACTTTCTTTAAATGAATAGAGAAACGTTATTTGGTTAGAGCCATTTTGCAAAGCTCTGCCGATCTTTAAAAATCGATGTCGGACAAGCCGTATCTCCAACTTGATACTTGGTATAATATGTTAAAGAGATGTTTCTTTGACCTTGTCAATTACAGAATGTGTAGACTGTGAGTAGCCTGTACTGATTGCTTCAATCATATTGTATCTTATTTTGGGGTTATGTCATTAACACGGGTTATGCAGATGATTTTGATCAAACTTTGAAACACTTTAACATTGATATTTTAAAGATTCATtcatttgtcatttgttgtAGCTAAGTTGTGTTCTAATCCCATCTGAAATGAATGCAGAAAAAGTTGCAGAATGTGAAGTGCATTCAAAATTCTTgaaacacatacaaataaagAGCTGTTTGACAGCTTGATTTAAAGTGCGATGCTAATTATTGTCTCCATCAATAAATGTTAAAATTTAAA

Function

GO:

id name namespace
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:0009346 citrate lyase complex cellular_component
GO:0046872 metal ion binding molecular_function
GO:0008815 citrate (pro-3S)-lyase activity molecular_function

KEGG:

id description
K11390 CLYBL; citrate lyase subunit beta-like protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU170077 lncRNA upstream 60175 23093298 ~ 23099790 (+) False dachd
XR_005640940.1 lncRNA upstream 190795 22966626 ~ 22969170 (+) True LOC120569671
XR_005640941.1 lncRNA upstream 190795 22966626 ~ 22969170 (+) False LOC120569671
TU169937 lncRNA upstream 361653 22797901 ~ 22798312 (+) True G126358
TU169931 lncRNA upstream 389045 22770710 ~ 22770920 (+) True G126352
TU170121 lncRNA downstream 10626 23232867 ~ 23236823 (+) True G126439
TU170130 lncRNA downstream 130336 23352577 ~ 23352820 (+) True G126447
TU170149 lncRNA downstream 177650 23399891 ~ 23400386 (+) True G126463
TU170213 lncRNA downstream 482144 23704385 ~ 23704642 (+) True G126515
TU170214 lncRNA downstream 482702 23704943 ~ 23705702 (+) True G126516
XM_039818131.1 mRNA upstream 59882 22978602 ~ 23100083 (+) False dachd
XM_039818136.1 mRNA upstream 59882 22978602 ~ 23100083 (+) False dachd
XM_039818138.1 mRNA upstream 59882 22978602 ~ 23100083 (+) False dachd
XM_039818139.1 mRNA upstream 59882 22978602 ~ 23100083 (+) False dachd
XM_039818134.1 mRNA upstream 59882 22978602 ~ 23100083 (+) False dachd
XM_039819120.1 mRNA downstream 21391 23243632 ~ 23247660 (+) True zic2a
XM_039818106.1 mRNA downstream 272700 23494941 ~ 23538664 (+) True itgbl1
XM_039818471.1 mRNA downstream 435013 23657254 ~ 23663191 (+) True cfap97d2
XM_039818725.1 mRNA downstream 441099 23663340 ~ 23677275 (+) True cdc16
XM_039818654.1 mRNA downstream 457417 23679658 ~ 23689877 (+) True upf3a
TU169945 other upstream 344863 22807193 ~ 22815102 (+) True G126363
XR_005641000.1 other upstream 1471163 21655131 ~ 21688802 (+) False LOC120569986
XR_005641085.1 other upstream 1532513 21619348 ~ 21627452 (+) False sox1a
TU169142 other upstream 2294523 20860152 ~ 20865442 (+) True G125757
TU169140 other upstream 2301055 20853089 ~ 20858910 (+) True mpc2b
XR_005641105.1 other downstream 1645080 24867321 ~ 24867439 (+) True LOC120570682
TU170822 other downstream 2407866 25630107 ~ 25658726 (+) False cacnb4a
TU170823 other downstream 2417565 25639806 ~ 25658726 (+) False cacnb4a
TU171128 other downstream 2894747 26116988 ~ 26129879 (+) True G127165
TU171231 other downstream 3189270 26411511 ~ 26417667 (+) False mphosph8

Expression Profile