RNA id: XM_039818654.1


Basic Information

Item Value
RNA id XM_039818654.1
length 2413
RNA type mRNA
GC content 0.43
exon number 10
gene id upf3a
representative True

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 23679658 ~ 23689877 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGTACACGGTGACTTAACACGGGcaagagggagatggagagaaatgAGGTCTGAAAAGGACCAAATGACCGTGGGCAAGGAGAAAAGCGTCGTTGAGATACAATTTAGAGACATCCCGAGAGAACAGGAAAACATCCCTGGCAACTTCAAGccgaaagaagagaagaaagaggtTTTTACTAAGGTGGTGATTCGAAGGCTTCCACCTAACCTGTCAAAGGACCAGCTAGAGGAACAGCTCAGTCCGCTTCCATCCTATGACTATTTTGAGTTCTTTCCCGCTGATCAAAGTCTTTCTCCCCATTTGTTCTCCAGAGCATATATcaattttaaaaacaatgaAGATATCCTTCTGTTCAGGGACCGATTTGATGGCTACGTCTTCATTGACAACAAGGGCCAAGAATATCCTGCAGTGGTGGAGTTTGCTCCCTTCCAGAAAATCTCAAAgaagaagttaaaaaagaaagatgcCAAATCCGGGAGCATTGAAGAAGACCCAGAGTATAAGCGGTTCTTGGAGAATTACTCCTGTGATGAAGAGAAGTCAATGGCCAACCCTGAGACTCTGCTAGGAGAGATAGAGGCCAAGACCAGAGAGCTCATAGCCAAACGGACAACACCACTGTTGGAGTacattaaaaataagaaaattgagaaacagAGAataagagaggagaagagagaagagaggagaagaagagagctTGAAAAGAAACGGcaaagggaggaggagaagagaaagcGACGAGAGGAGGAGAGACGCAAACGAAAAGAGGCAGATAAGCAGAAGAAATTGTCTGATAAAGACATCAAAATTAAGCTCCTGAAGAAGAGTGACAGGGACGATGACGTGGACTCAGACCGAATGAAGGACAAAAGTGACATcggggagacagacagaggcaaaTGGGAGAAAGCTGGAGGACAAACAAAGTCGAAGGACCCCAAAGAAAAAAGTCTGCCTGAGAGTGAAAAGGAGCAGAGAGAGCAGCACAGCCGCAGACAAAGAGATAAGGATCACCGTGGAAAAGATGAAGAGAGGAAACGACAGCGACACCATTATGAGTTTGACAAGTTTATGCGCCGCAAAGATGAGACCAAATGGGGGAAAGGTTACTGCCAGGACAGAGCCAAGAAAGAGGGGCATCATCATGGCTATTCTTACTGTCCTGACATTGGAGACAAACTAGGaaaggaggacagggaggaCCTGGGTAACAGGAAGGAACGCCTCCGAAACAAGGTGAGCGAGAAGGACCGTCCAGCCATGCAGCTCTATCAGCCAGGCGCACGCAACAGGAAGCGCATGAGCTCAGCAGGCAAAGGCTATGACTGCATCCCCTCACCTGAATCCGGGACAGAGCATTGCTATGAGGCTGTCACTATGGCGACGGGGCTGGAGAAGGGGTTCGAGAAAAGCAAAGATGAACAGTGAGCAGTCTGGATGTTTAtcgaaaatacaaataaatgattCAGCTTAAATTGATGGTGGGTGACAGGTTTGACAGTTTATCATTgagcttttaaaaaagaaagaaaactgtCTTTTAGTCATTTTCATCTGTACTGGATGGAACCGATTTCAGAGCCTTGAATGTTGGTTaaggtttttgttttgctgGAGCATGAACGTTTTAAGTACACACTAAATATGTTACTTGTCTCACTGTTTAATACTCAAAGAATCCTTGGAATGAACCATGCGAGACTAAGAACAGGGCTAAACAATAATAGTTAGCTTTATGACAGCACAACAGTCAGTGTCAGACCATGCAGTGTCATTCCTTTTGGTCATCGTGTTTTGGAAGTGTGTCCCTGTCAAAGGCAGCTCACCTGTGGTATCCTTCAACAATGTTCTGGTGAAACCATGATCTCATCCTCTGCAACCGGTCTTGTTACTAAGCGTTTGTAGACTCTGCTGAACCTGGATGTTTTTAATAATCAAATagattttattaaaatgaaatataatgTAAGTAGAACTTACAAACAATGGATGTAGAAAAAGTCACAGAGGAAATCCTGTGTGTATTTTCGTGTGTAAAGGTGAGCGAATGAGAGGGGGTAGGAGTTATTATTGATAAAGAGAGGACAATGTTTTACCGCTTTTTCGTAGTTTCTATGCATCTTATTACATGTGGTCCAGCTTATTCTAAGGTGTGGTCCAACAGAGACAATAATTTATTTGTGAGCAAAGCTTTGTACACGATCACCCATGAGCCAAGAAGAACACGTTCTCTACATTTCTATAAAGTATTTCCTAGAAAGAAGATGTAAAGTTGCAAAGCATGACACCGGTTAATGAAAACAATTAATTTTCTATGCTGTGTGCATGGTTTTTCTATTAATTCTGTCaagtaaatgtaaaagaaaaatccaCAAATATTGATAAAGTAATATGTCTTTTTAA

Function

GO: NA

KEGG:

id description
K14328 UPF3, RENT3; regulator of nonsense transcripts 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU170149 lncRNA upstream 279272 23399891 ~ 23400386 (+) True G126463
TU170130 lncRNA upstream 326838 23352577 ~ 23352820 (+) True G126447
TU170121 lncRNA upstream 442835 23232867 ~ 23236823 (+) True G126439
TU170077 lncRNA upstream 579868 23093298 ~ 23099790 (+) False dachd
XR_005640941.1 lncRNA upstream 710488 22966626 ~ 22969170 (+) False LOC120569671
TU170213 lncRNA downstream 14508 23704385 ~ 23704642 (+) True G126515
TU170214 lncRNA downstream 15066 23704943 ~ 23705702 (+) True G126516
TU170217 lncRNA downstream 20526 23710403 ~ 23711118 (+) True G126519
TU170218 lncRNA downstream 23611 23713488 ~ 23713977 (+) True G126520
TU170273 lncRNA downstream 256267 23946144 ~ 23947968 (+) True G126563
XM_039818725.1 mRNA upstream 2383 23663340 ~ 23677275 (+) True cdc16
XM_039818471.1 mRNA upstream 16467 23657254 ~ 23663191 (+) True cfap97d2
XM_039818106.1 mRNA upstream 140994 23494941 ~ 23538664 (+) True itgbl1
XM_039819120.1 mRNA upstream 431998 23243632 ~ 23247660 (+) True zic2a
XM_039818761.1 mRNA upstream 457417 23159965 ~ 23222241 (+) True clybl
XM_039818656.1 mRNA downstream 959 23690836 ~ 23695194 (+) True p2ry8
XM_039818834.1 mRNA downstream 5510 23695387 ~ 23703927 (+) True asmtl
XM_039818835.1 mRNA downstream 5510 23695387 ~ 23703430 (+) False asmtl
XM_039818309.1 mRNA downstream 215259 23905136 ~ 23929409 (+) True ppp2r3b
XM_039818314.1 mRNA downstream 289860 23979737 ~ 24028770 (+) True usp9
TU169945 other upstream 864556 22807193 ~ 22815102 (+) True G126363
XR_005641000.1 other upstream 1990856 21655131 ~ 21688802 (+) False LOC120569986
XR_005641085.1 other upstream 2052206 21619348 ~ 21627452 (+) False sox1a
TU169142 other upstream 2814216 20860152 ~ 20865442 (+) True G125757
TU169140 other upstream 2820748 20853089 ~ 20858910 (+) True mpc2b
XR_005641105.1 other downstream 1177444 24867321 ~ 24867439 (+) True LOC120570682
TU170822 other downstream 1940230 25630107 ~ 25658726 (+) False cacnb4a
TU170823 other downstream 1949929 25639806 ~ 25658726 (+) False cacnb4a
TU171128 other downstream 2427111 26116988 ~ 26129879 (+) True G127165
TU171231 other downstream 2721634 26411511 ~ 26417667 (+) False mphosph8

Expression Profile